View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796-Insertion-14 (Length: 138)

Name: NF0796-Insertion-14
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796-Insertion-14
NF0796-Insertion-14
[»] chr7 (7 HSPs)
chr7 (7-138)||(1301139-1301269)
chr7 (7-135)||(8659041-8659169)
chr7 (7-128)||(10494743-10494864)
chr7 (77-123)||(8616429-8616475)
chr7 (66-128)||(8654187-8654249)
chr7 (77-128)||(8667167-8667218)
chr7 (56-123)||(8590365-8590432)
[»] chr4 (2 HSPs)
chr4 (7-133)||(9336255-9336381)
chr4 (77-123)||(30775000-30775046)
[»] chr2 (2 HSPs)
chr2 (7-116)||(16657898-16658007)
chr2 (77-122)||(16662367-16662412)
[»] chr1 (1 HSPs)
chr1 (7-133)||(4678921-4679047)
[»] chr8 (1 HSPs)
chr8 (79-123)||(12528254-12528298)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 9e-62; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 1301139 - 1301269
Alignment:
Q  7 agcaacagcctcgtcggggttgatactcttgtataaaactttctccgggaaaatgtcttgcaatatatcttgcactttgggaatcctagacgagccaccc 106  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1301139 agcaacagcctcgtcggg-ttgatactcttgtataaaactttctccgggaaaatgtcttgcaatatatcttgcactttgggaatcctagacgagccaccc 1301237  T
Q  107 acaagaacaatatcatcgatatgactcatgca 138  Q
    |||||||||||||||||||||| |||||||||    
T  1301238 acaagaacaatatcatcgatatcactcatgca 1301269  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 8659041 - 8659169
Alignment:
Q  7 agcaacagcctcgtcggggttgatactcttgtataaaactttctccgggaaaatgtcttgcaatatatcttgcactttgggaatcctagacgagccaccc 106  Q
    |||||||||||| || ||||||||||||||||||||||| ||||  ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  8659041 agcaacagcctcatctgggttgatactcttgtataaaaccttctttgggaaaaggtcttgcaatagatcttgcactttgggaatcctagacgaaccaccc 8659140  T
Q  107 acaagaacaatatcatcgatatgactcat 135  Q
    |||||||||||||| || |||| ||||||    
T  8659141 acaagaacaatatcgtcaatatcactcat 8659169  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 10494864 - 10494743
Alignment:
Q  7 agcaacagcctcgtcggggttgatactcttgtataaaactttctccgggaaaatgtcttgcaatatatcttgcactttgggaatcctagacgagccaccc 106  Q
    |||||||||||| || |||||||||| | || ||||  | ||| ||  |||||  ||| |||||| ||| ||||||||||||||||||||||||||||||    
T  10494864 agcaacagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccaccc 10494765  T
Q  107 acaagaacaatatcatcgatat 128  Q
    ||||||||||||||||| ||||    
T  10494764 acaagaacaatatcatcaatat 10494743  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 8616429 - 8616475
Alignment:
Q  77 tgcactttgggaatcctagacgagccacccacaagaacaatatcatc 123  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||    
T  8616429 tgcactttaggaatcctagacgagccaccgacaagaacaatatcatc 8616475  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 8654187 - 8654249
Alignment:
Q  66 gcaatatatcttgcactttgggaatcctagacgagccacccacaagaacaatatcatcgatat 128  Q
    |||||| ||| |||||||||||||||||||||||||||||||| || |||| |||||| ||||    
T  8654187 gcaatagatcctgcactttgggaatcctagacgagccacccacgagtacaacatcatcaatat 8654249  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 8667167 - 8667218
Alignment:
Q  77 tgcactttgggaatcctagacgagccacccacaagaacaatatcatcgatat 128  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||||| ||||    
T  8667167 tgcactttgggaatcctagacgagccaccgacaagtacaacatcatcaatat 8667218  T

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Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 8590365 - 8590432
Alignment:
Q  56 aaaatgtcttgcaatatatcttgcactttgggaatcctagacgagccacccacaagaacaatatcatc 123  Q
    |||| |||||||||||  |  |||||||||||||||||||| || ||||| ||||| |||| ||||||    
T  8590365 aaaaagtcttgcaatagctgctgcactttgggaatcctagaagaaccaccaacaagtacaacatcatc 8590432  T

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Target: chr4 (Bit Score: 51; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 9336381 - 9336255
Alignment:
Q  7 agcaacagcctcgtcggggttgatactcttgtataaaactttctccgggaaaatgtcttgcaatatatcttgcactttgggaatcctagacgagccaccc 106  Q
    |||||||||||| || |||||||||| | || ||||  | ||| ||  |||||  ||| ||||||  ||||||||||| |||||||||||||||||||||    
T  9336381 agcaacagcctcatctgggttgatacccatgaataattccttccccttgaaaaattctagcaatagttcttgcactttcggaatcctagacgagccaccc 9336282  T
Q  107 acaagaacaatatcatcgatatgactc 133  Q
    ||||||||||||||||| |||| ||||    
T  9336281 acaagaacaatatcatcaatattactc 9336255  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 30775000 - 30775046
Alignment:
Q  77 tgcactttgggaatcctagacgagccacccacaagaacaatatcatc 123  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||    
T  30775000 tgcactttgggaatcctagaagaaccaccgacaagaacaatatcatc 30775046  T

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Target: chr2 (Bit Score: 50; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 16658007 - 16657898
Alignment:
Q  7 agcaacagcctcgtcggggttgatactcttgtataaaactttctccgggaaaatgtcttgcaatatatcttgcactttgggaatcctagacgagccaccc 106  Q
    ||||||||| || || ||||||||||| ||| ||||| | ||  ||  ||||| ||||||||||| ||| |||||||||||||||||||| |||||||||    
T  16658007 agcaacagcttcatccgggttgatacttttgcataaatccttgcccttgaaaaagtcttgcaatagatcctgcactttgggaatcctagatgagccaccc 16657908  T
Q  107 acaagaacaa 116  Q
    ||||||||||    
T  16657907 acaagaacaa 16657898  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 16662412 - 16662367
Alignment:
Q  77 tgcactttgggaatcctagacgagccacccacaagaacaatatcat 122  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||    
T  16662412 tgcacttttggaatcctagacgagcccccgacaagaacaatatcat 16662367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 4679047 - 4678921
Alignment:
Q  7 agcaacagcctcgtcggggttgatactcttgtataaaactttctccgggaaaatgtcttgcaatatatcttgcactttgggaatcctagacgagccaccc 106  Q
    |||||||||||| || ||||||||||||||| | ||| | |||  |   |||| ||||||||||| ||| ||||||||||||||||| || || ||||||    
T  4679047 agcaacagcctcatctgggttgatactcttgcacaaatccttccgcttaaaaaagtcttgcaatagatcctgcactttgggaatcctcgatgaaccaccc 4678948  T
Q  107 acaagaacaatatcatcgatatgactc 133  Q
    |||||||||| |||||| |||| ||||    
T  4678947 acaagaacaacatcatcaatattactc 4678921  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 12528254 - 12528298
Alignment:
Q  79 cactttgggaatcctagacgagccacccacaagaacaatatcatc 123  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||    
T  12528254 cactttgggaatcctagacgagccaccaacaagtacaatatcatc 12528298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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