View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796-Insertion-15 (Length: 131)
Name: NF0796-Insertion-15
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796-Insertion-15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 18347907 - 18348030
Alignment:
| Q |
8 |
gaaacatagtgcaccaggtgatctaacattgaaagatgcttatgctttcaaaaaacatgttttccctaagattctttgggctaaacacatttggtctaaa |
107 |
Q |
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| T |
18347907 |
gaaacatagtgcaccaggtgatctaacattgaaagatgcttatgctttcaaaaaacatgtttttcctaagattctttgggctaaacacatttggtctaaa |
18348006 |
T |
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| Q |
108 |
gatattcccccttccaaatcatta |
131 |
Q |
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| T |
18348007 |
gatattcccccttccaaatcatta |
18348030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 13139871 - 13139782
Alignment:
| Q |
38 |
gaaagatgcttatgctttcaaaaaacatgttttccctaagattctttgggctaaacacatttggtctaaagatattcccccttccaaatc |
127 |
Q |
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| T |
13139871 |
gaaagatgcatatgcttttaaaaaacatcactttcccaagattaagtgggcaaaactcatttggtcaaaggatattcccccttccaaatc |
13139782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 24558571 - 24558482
Alignment:
| Q |
38 |
gaaagatgcttatgctttcaaaaaacatgttttccctaagattctttgggctaaacacatttggtctaaagatattcccccttccaaatc |
127 |
Q |
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| T |
24558571 |
gaaagatgcatatgcttttaaaaaacatcactttcccaagattaagtgggcaaaactcatttggtcaaaggatattcccccttccaaatc |
24558482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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