View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796-Insertion-3 (Length: 768)
Name: NF0796-Insertion-3
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 9 - 526
Target Start/End: Original strand, 2166091 - 2166589
Alignment:
| Q |
9 |
caacaaattttaagacaaaacaagaagttaggagtgagtagtaacgcaagttgtgtgtggatttgtgcaacaatgtagaaggtgtcgggaagaggaaata |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2166091 |
caacaaattttaagacaaaacaagaagttaggagtgagtagtaacgcaagttgtgtgtggatttgtgcaacaatgtagaaggtgtcgggaagaggaaata |
2166190 |
T |
|
| Q |
109 |
atggagacaaaggtaacgacggaagagtattcattggctttgttcaatgatgattatggacgagagcataagcaaaagcaagtgtgctgcaatttgaaac |
208 |
Q |
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| T |
2166191 |
atggagacaaaggtaacgacggaagagtattcattggctttgttcaatgatgattatggacgagagcat------aagcaagtgtgctgcaatttgaaac |
2166284 |
T |
|
| Q |
209 |
gctttttgagacagtgggtgaagaaatacacatggcctttctttgccttttcttcattgaatttggatcaacaagtggccaacttgtacacgaccaacta |
308 |
Q |
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| T |
2166285 |
gctttttgagacagt-ggtgaagaaatacacatggcctttctttgcc-tttgttcattgaatttggatcaacaagtggccaacttgtacacgaccaacta |
2166382 |
T |
|
| Q |
309 |
ggagcagtacagtataatttgttgcttttaaa--atatatttttagctttcatgtgcccnnnnnnnnnnnnnnnnnngttttgttaggaaggtgaaataa |
406 |
Q |
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| T |
2166383 |
ggatcagtacagtataatttgttgcttttaaaatatatatttttagctttcatgtgtcctttttt-------------ttttgttaggaaggtgaaataa |
2166469 |
T |
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| Q |
407 |
tccattgaaattagattatggtcatgaagatgctgatagtatgcacgctcgcactaacttcattttttagggttgcaaactttttgttttaaaaagttaa |
506 |
Q |
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| T |
2166470 |
tccattgaaattaaattatggtcatgaagatgctgagagtatgcacgctcgcactaacttcattttttagggttgcaaattttttgttttaaaaagttaa |
2166569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 634 - 768
Target Start/End: Original strand, 2170032 - 2170166
Alignment:
| Q |
634 |
ctagaagcccaaatttgcagtgcagattcacaactaataatggtaaattttggctacaacagaatcttttcattctcccttgccttcttactttaaataa |
733 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2170032 |
ctagaagcccaaatttgcagtgcagattcacaactaataatggtaaattttggctacaacagaatcttttcattctcccttgccttcttactttaaataa |
2170131 |
T |
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| Q |
734 |
ataataagatgattactactgcttaatacccccag |
768 |
Q |
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| T |
2170132 |
ataataagatgattactactgcttaatacccccag |
2170166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 2152732 - 2152890
Alignment:
| Q |
16 |
ttttaagacaaaacaagaagttaggagtgagtagtaacgcaagttgtgtgtggatttgtgcaacaatgtagaaggtgtcgggaagaggaaataatggaga |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| ||||| | |
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| T |
2152732 |
ttttaagacaaaataagaagttaggagtgagtagtaacgcaaattatgtgtggatttgtgcaacaatgtagaaggtgtcggaaagaggaaattatggata |
2152831 |
T |
|
| Q |
116 |
caaaggtaacgacggaagagtattcattggctttgttcaatgatgattatggacgagag |
174 |
Q |
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| T |
2152832 |
caaaggtaatgatggaagagtatcctttggcttcattcagtgatgattatggacgagag |
2152890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 2154170 - 2154263
Alignment:
| Q |
184 |
aagcaagtgtgctgcaatttgaaacgctttttgagacagtgggtgaagaaa----tacacatggcctttctttgccttttcttcattgaatttgga |
275 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||| | |||| |||||| || ||||||||||| ||| ||||||||||||||| |
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| T |
2154170 |
aagcaagtgtgctgcaatttgaaacgcttttcgagacagt-ggtaacgaaatacgtacacaaggtctttctttgcc-tttgttcattgaatttgga |
2154263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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