View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796-Insertion-4 (Length: 741)

Name: NF0796-Insertion-4
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796-Insertion-4
NF0796-Insertion-4
[»] chr2 (4 HSPs)
chr2 (8-741)||(37065473-37066204)
chr2 (691-741)||(44132602-44132652)
chr2 (682-741)||(11133072-11133132)
chr2 (683-741)||(14307733-14307791)
[»] chr7 (6 HSPs)
chr7 (684-741)||(10474551-10474608)
chr7 (681-741)||(7465462-7465522)
chr7 (681-741)||(11808034-11808094)
chr7 (682-741)||(43635585-43635644)
chr7 (683-741)||(32814825-32814883)
chr7 (683-733)||(37410528-37410578)
[»] chr8 (5 HSPs)
chr8 (681-741)||(216186-216246)
chr8 (681-741)||(692746-692806)
chr8 (681-741)||(696955-697015)
chr8 (681-741)||(729809-729869)
chr8 (681-741)||(853704-853764)
[»] chr1 (9 HSPs)
chr1 (681-741)||(47645835-47645895)
chr1 (682-741)||(9768848-9768907)
chr1 (682-741)||(18003813-18003872)
chr1 (682-741)||(42801876-42801935)
chr1 (682-741)||(42908768-42908827)
chr1 (682-741)||(52961121-52961180)
chr1 (682-728)||(51917554-51917600)
chr1 (684-741)||(5862127-5862184)
chr1 (684-741)||(11238067-11238124)
[»] chr5 (4 HSPs)
chr5 (682-741)||(7147058-7147117)
chr5 (680-741)||(42801480-42801541)
chr5 (681-741)||(36742006-36742066)
chr5 (683-737)||(11246537-11246591)
[»] chr4 (4 HSPs)
chr4 (681-741)||(27921892-27921952)
chr4 (684-740)||(49319392-49319448)
chr4 (685-741)||(52556714-52556770)
chr4 (682-739)||(12820446-12820504)
[»] scaffold0168 (1 HSPs)
scaffold0168 (682-741)||(34072-34131)
[»] chr6 (2 HSPs)
chr6 (682-741)||(25064708-25064767)
chr6 (682-741)||(34524872-34524931)
[»] chr3 (5 HSPs)
chr3 (681-728)||(2903704-2903751)
chr3 (683-728)||(3973300-3973345)
chr3 (683-728)||(3996531-3996576)
chr3 (682-739)||(24130556-24130613)
chr3 (684-741)||(24160567-24160624)


Alignment Details
Target: chr2 (Bit Score: 648; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 8 - 741
Target Start/End: Complemental strand, 37066204 - 37065473
Alignment:
Q  8 ctatcatcgcctcgttgagcccgccaccgttccggcaagtcacctgagagagatttccaaagggcatgtactccatgaagaggttgaacaagtgcttgtt 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37066204 ctatcatcgcctcgttgagccggccaccgttccggcaagtcacctgagagagatttccaaagggcatgtactccatgaagaggttgaacaagtgcttgtt 37066105  T
Q  108 attctcctttgaaaagttacaacctttgtaggtaactatgtaaggagaggacagagaagaaagaattctttgttctctctggagttggtttgagtttggt 207  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37066104 attctcctttgaaaagttgcaacctttgtaggtaactatgtaaggagaggacagagaagaaagaattctttgttcactctggagttggtttgagtttggt 37066005  T
Q  208 agtgatgtctccgttgatttaaccgcggagacatcggtggagcgacgagaggtggcgaggtagacggtggcggatgagccatgtccgatgatgttgcctc 307  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37066004 agtgatgtctccgctgatttaaccgcggagacatcggtggagcgacgagaggtggcgaggtagacggtggcggatgagccatgtccgatgatgttgcctc 37065905  T
Q  308 tagtccactccatctccatattttgtgtttaaggctatagtttgatattgcggcctttatataatagttgaaaaaataggcacactttgaatatgagttt 407  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37065904 tagtccactccatctccatattttgtgtttaaggctatggtttgatattgcggcctttatataatagttgaaaaaataggcacactttgaatatgagttt 37065805  T
Q  408 taaaaggattaattttattggttggtttacttaattagttgaagctattttccctttagaggggagtgagtgttacttcaaaggggagtttaggacgtgt 507  Q
    | |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37065804 tta---gattaattttattggttggtttacttaattagttgaagctattttccctttagaggggagtgagtgttacttcaaaggggagtttaggacgtgt 37065708  T
Q  508 tcaaatttgggtggttgtggcagcttagttggcaatttattattatatggcacgtggaaaatttaacctagaagttttttgtatagtgtgtgaattatta 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37065707 tcaaatttgggtggttgtggcagcttagttggcaatttattattatatggcacgtggaaaatttaacctagaagttttttgtatagtgtgtgaattatta 37065608  T
Q  608 catccatctagataccattttaagttgatataaacgaaactagacttctatctctt-nnnnnnntgtgattgggtcccgtgatcatagctcagttggtat 706  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| |||||||| ||||||||    
T  37065607 catccatctagataccaatttaagttgatataaacgaaactagacttctatctcttaaaaaaaatgtgattgggtcccgtgagcatagctctgttggtat 37065508  T
Q  707 agacatacattgttatatgcagtggtcggggttcg 741  Q
     ||||| ||||||||||||||||||||||||||||    
T  37065507 ggacatgcattgttatatgcagtggtcggggttcg 37065473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 691 - 741
Target Start/End: Complemental strand, 44132652 - 44132602
Alignment:
Q  691 atagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||||||||||| | |||||| ||||||||||||||| ||||||||||||    
T  44132652 atagctcagttggcagagacatgcattgttatatgcagaggtcggggttcg 44132602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 11133072 - 11133132
Alignment:
Q  682 cccgtgatcatagctcagttggtatagaca-tacattgttatatgcagtggtcggggttcg 741  Q
    ||||||| ||||||||||||||||  |||| | ||||||||||||||| ||||||||||||    
T  11133072 cccgtgagcatagctcagttggtagggacaatgcattgttatatgcaggggtcggggttcg 11133132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 741
Target Start/End: Complemental strand, 14307791 - 14307733
Alignment:
Q  683 ccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||||| ||| ||||||||||||  ||||| ||||||||||||||| ||||| ||||||    
T  14307791 ccgtgagcatggctcagttggtagggacatgcattgttatatgcaggggtcgaggttcg 14307733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 684 - 741
Target Start/End: Complemental strand, 10474608 - 10474551
Alignment:
Q  684 cgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||| ||||||||||||    
T  10474608 cgtgagcatagttcagttggtagagacatacattgttatatgcaggggtcggggttcg 10474551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 681 - 741
Target Start/End: Original strand, 7465462 - 7465522
Alignment:
Q  681 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||||||| |||||||||||||| | |||||| |||| |||||||||| || |||||||||    
T  7465462 tcccgtgagcatagctcagttggcagagacatgcattattatatgcaggggccggggttcg 7465522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 681 - 741
Target Start/End: Original strand, 11808034 - 11808094
Alignment:
Q  681 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||||||| | ||||||| ||||||  ||||| ||||||||||||||| ||||||||||||    
T  11808034 tcccgtgagcttagctcaattggtagggacatgcattgttatatgcaggggtcggggttcg 11808094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 43635585 - 43635644
Alignment:
Q  682 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||||| |||| ||||||||| | | |||| ||||||||||||||| ||||||||||||    
T  43635585 cccgtgagcataactcagttggcagaaacatgcattgttatatgcagcggtcggggttcg 43635644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 741
Target Start/End: Original strand, 32814825 - 32814883
Alignment:
Q  683 ccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||||| ||||||||||||||||  ||||| |||| |||||||||| |||||| |||||    
T  32814825 ccgtgagcatagctcagttggtagggacatgcattattatatgcaggggtcggagttcg 32814883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 733
Target Start/End: Complemental strand, 37410578 - 37410528
Alignment:
Q  683 ccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtc 733  Q
    |||||| ||||||||||||||||  ||||| ||||||||||||||| ||||    
T  37410578 ccgtgagcatagctcagttggtaaggacatgcattgttatatgcaggggtc 37410528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 741
Target Start/End: Complemental strand, 216246 - 216186
Alignment:
Q  681 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||||| |||| |||||||    
T  216246 tcccgtgagcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcg 216186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 741
Target Start/End: Complemental strand, 692806 - 692746
Alignment:
Q  681 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||||| |||| |||||||    
T  692806 tcccgtgagcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcg 692746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 741
Target Start/End: Complemental strand, 697015 - 696955
Alignment:
Q  681 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||||| |||| |||||||    
T  697015 tcccgtgagcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcg 696955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 741
Target Start/End: Complemental strand, 729869 - 729809
Alignment:
Q  681 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||||| |||| |||||||    
T  729869 tcccgtgagcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcg 729809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 741
Target Start/End: Complemental strand, 853764 - 853704
Alignment:
Q  681 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||||| |||| |||||||    
T  853764 tcccgtgagcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcg 853704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 741
Target Start/End: Complemental strand, 47645895 - 47645835
Alignment:
Q  681 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||| ||| |||||||||||||| | |||||| ||||||||||||||| ||||||||||||    
T  47645895 tcccatgagcatagctcagttggcagagacatgcattgttatatgcagaggtcggggttcg 47645835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 682 - 741
Target Start/End: Complemental strand, 9768907 - 9768848
Alignment:
Q  682 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||||| |||||||||||||| |  ||||| ||||||||||||||| ||||||||||||    
T  9768907 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggtcggggttcg 9768848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 18003813 - 18003872
Alignment:
Q  682 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||||| |||||||||||||| |  ||||| ||||||||||||||| || |||||||||    
T  18003813 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcg 18003872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 42801876 - 42801935
Alignment:
Q  682 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||||| |||||||||||||  | |||||| ||||||||||||||| ||| ||||||||    
T  42801876 cccgtgaacatagctcagttgacagagacatgcattgttatatgcagaggttggggttcg 42801935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 42908768 - 42908827
Alignment:
Q  682 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||||| | |||||||||||| |  ||||| ||||||||||||||| ||||||||||||    
T  42908768 cccgtgagcttagctcagttggcagggacatgcattgttatatgcaggggtcggggttcg 42908827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 741
Target Start/End: Complemental strand, 52961180 - 52961121
Alignment:
Q  682 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||||| |||||||||||||| |  ||||| ||||||||||||||| || |||||||||    
T  52961180 cccgtgagcatagctcagttggcaaggacatgcattgttatatgcaggggccggggttcg 52961121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 728
Target Start/End: Complemental strand, 51917600 - 51917554
Alignment:
Q  682 cccgtgatcatagctcagttggtatagacatacattgttatatgcag 728  Q
    ||||||| |||||||||||||| |||||||| |||| ||||||||||    
T  51917600 cccgtgagcatagctcagttggcatagacatgcattattatatgcag 51917554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 741
Target Start/End: Original strand, 5862127 - 5862184
Alignment:
Q  684 cgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||| |||||||||||||| |  ||||| |||||||||||| || ||||||||||||    
T  5862127 cgtgaacatagctcagttggcagggacatgcattgttatatgtagaggtcggggttcg 5862184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 741
Target Start/End: Complemental strand, 11238124 - 11238067
Alignment:
Q  684 cgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||| |||||||||| ||| || ||||| |||| |||||||||| ||||||||||||    
T  11238124 cgtgagcatagctcagatggcatggacatgcattattatatgcaggggtcggggttcg 11238067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 682 - 741
Target Start/End: Complemental strand, 7147117 - 7147058
Alignment:
Q  682 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||||| ||||||||||||||||  ||||| |||| |||||||||| ||||||||||||    
T  7147117 cccgtgagcatagctcagttggtaaggacatgcattattatatgcaggggtcggggttcg 7147058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 741
Target Start/End: Complemental strand, 42801541 - 42801480
Alignment:
Q  680 gtcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||||||||||||||||||||||||||    || |||| |||||||||| ||||||||||||    
T  42801541 gtcccgtgatcatagctcagttggtatgataatgcattattatatgcaggggtcggggttcg 42801480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 681 - 741
Target Start/End: Complemental strand, 36742066 - 36742006
Alignment:
Q  681 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||||||| |||||||||||||| | ||||||  |||||||||||||| | ||||||||||    
T  36742066 tcccgtgagcatagctcagttggcagagacatgaattgttatatgcagggatcggggttcg 36742006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 737
Target Start/End: Complemental strand, 11246591 - 11246537
Alignment:
Q  683 ccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcgggg 737  Q
    |||||| |||||||||||||| |  ||||| ||||||||||||||| ||||||||    
T  11246591 ccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggtcgggg 11246537  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 681 - 741
Target Start/End: Original strand, 27921892 - 27921952
Alignment:
Q  681 tcccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||||||| ||||||||||||||||  ||||| |||| |||||||||| || |||||||||    
T  27921892 tcccgtgagcatagctcagttggtagggacatgcattattatatgcaggggccggggttcg 27921952  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 684 - 740
Target Start/End: Original strand, 49319392 - 49319448
Alignment:
Q  684 cgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttc 740  Q
    ||||| |||||||||||||| || ||||| |||| |||||||||| |||||||||||    
T  49319392 cgtgagcatagctcagttggcatggacatgcattattatatgcaggggtcggggttc 49319448  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 685 - 741
Target Start/End: Complemental strand, 52556770 - 52556714
Alignment:
Q  685 gtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    |||| ||||||||||||| ||   |||||||||||||||||||| ||||||||||||    
T  52556770 gtgaacatagctcagttgataggaacatacattgttatatgcaggggtcggggttcg 52556714  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 12820504 - 12820446
Alignment:
Q  682 cccgtgatcatagctcagttggtatagaca-tacattgttatatgcagtggtcggggtt 739  Q
    ||||||| |||||||||||||| | ||||| | ||||||||||||||| ||||||||||    
T  12820504 cccgtgagcatagctcagttggcagagacaatgcattgttatatgcaggggtcggggtt 12820446  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 741
Target Start/End: Complemental strand, 34131 - 34072
Alignment:
Q  682 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||||| |||||||||||||| |  ||||| ||||||||||||||| || |||||||||    
T  34131 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcg 34072  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 741
Target Start/End: Complemental strand, 25064767 - 25064708
Alignment:
Q  682 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||||| ||||| ||||||||||| ||||| |||| |||||||||| ||| ||||||||    
T  25064767 cccgtgagcatagttcagttggtatggacatgcattattatatgcaggggttggggttcg 25064708  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 34524872 - 34524931
Alignment:
Q  682 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||||| |||||||||||||| |  ||||| ||||||||||||||| || |||||||||    
T  34524872 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcg 34524931  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 728
Target Start/End: Original strand, 2903704 - 2903751
Alignment:
Q  681 tcccgtgatcatagctcagttggtatagacatacattgttatatgcag 728  Q
    |||||||| ||||||| |||||| || |||||||||||||||||||||    
T  2903704 tcccgtgaacatagcttagttggcatggacatacattgttatatgcag 2903751  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 728
Target Start/End: Original strand, 3973300 - 3973345
Alignment:
Q  683 ccgtgatcatagctcagttggtatagacatacattgttatatgcag 728  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||||    
T  3973300 ccgtgagcatagctcagttggtagggacatgcattgttatatgcag 3973345  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 728
Target Start/End: Complemental strand, 3996576 - 3996531
Alignment:
Q  683 ccgtgatcatagctcagttggtatagacatacattgttatatgcag 728  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||||    
T  3996576 ccgtgagcatagctcagttggtagggacatgcattgttatatgcag 3996531  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 24130556 - 24130613
Alignment:
Q  682 cccgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggtt 739  Q
    ||||||| |||| ||||||||| |  ||||||||||||||||||||| || |||||||    
T  24130556 cccgtgagcataactcagttggcagggacatacattgttatatgcaggggacggggtt 24130613  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 741
Target Start/End: Complemental strand, 24160624 - 24160567
Alignment:
Q  684 cgtgatcatagctcagttggtatagacatacattgttatatgcagtggtcggggttcg 741  Q
    ||||| |||| ||||||||| | |||||| || |||||||||||| ||||||||||||    
T  24160624 cgtgagcataactcagttggcagagacatgcactgttatatgcaggggtcggggttcg 24160567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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