View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796-Insertion-6 (Length: 499)

Name: NF0796-Insertion-6
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796-Insertion-6
NF0796-Insertion-6
[»] chr2 (6 HSPs)
chr2 (8-499)||(14555918-14556411)
chr2 (8-50)||(9446998-9447040)
chr2 (8-48)||(31320279-31320319)
chr2 (8-50)||(41411518-41411560)
chr2 (10-48)||(21949895-21949933)
chr2 (10-42)||(40275169-40275201)
[»] chr7 (3 HSPs)
chr7 (126-242)||(30559039-30559154)
chr7 (8-65)||(30559343-30559400)
chr7 (8-48)||(49094543-49094583)
[»] chr5 (1 HSPs)
chr5 (10-50)||(31610069-31610109)
[»] chr4 (3 HSPs)
chr4 (8-42)||(2049016-2049050)
chr4 (8-50)||(39735845-39735887)
chr4 (10-42)||(3958949-3958981)
[»] chr1 (2 HSPs)
chr1 (8-42)||(42080695-42080729)
chr1 (10-42)||(43403898-43403930)


Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 499
Target Start/End: Original strand, 14555918 - 14556411
Alignment:
Q  8 ccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactttcaagttgacagttttgtttttcttatgttttgctagttctgttgctggacaggtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14555918 ccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactttcaagttgacagttttgtttttcttatgttttgctagttctgttgctggacaggtt 14556017  T
Q  108 tgtagataagcagtgcctgtgttgaataactagtcttttctggtagctttcagtggtggtggactttttaccacctttggtagttttgatcctttctcct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14556018 tgtagataagcagtgcctgtgttgaataactagtcttttctggtagctttcagtggtggtggactttttaccacctttggtagttttgatcctttctcct 14556117  T
Q  208 ttgaagtggtagacttcataggaggattcatgttcnnnnnnnnnnnnnnnnnnnnnattgggtctttggcttggtnnnnnnnaattttgtacttgtctct 307  Q
    |||||||||||||||||||||||||||||||||||                     |||||||||||||||||||       |||||| |||||||||||    
T  14556118 ttgaagtggtagacttcataggaggattcatgttctttttggttttttctggttttattgggtctttggcttggtcccccccaattttatacttgtctct 14556217  T
Q  308 ttcttttattgcctttatnnnnnnnt--aaaataatctctatctttattaataatgataatttggttccttgaaggactgtattgatttaactgttggaa 405  Q
    ||||||||||||||||||       |  |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14556218 ttcttttattgcctttatagaaaaataaaaaaaaatctctgtctttattaatgatgataatttggttccttgaaggactgtattgatttaactgttggaa 14556317  T
Q  406 gaattgtattgatttttagaatgacctttagtttctctcatttaccttgaagggaatgcctatgctgatacacttgccaactgtaatgttagca 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14556318 gaattgtattgatttttagaatgacctttagtttctctcatttaccttgaagggaatgcctatgctgatacgcttgccaactgtaatgttagca 14556411  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 9446998 - 9447040
Alignment:
Q  8 ccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgact 50  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9446998 ccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgact 9447040  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 31320279 - 31320319
Alignment:
Q  8 ccaaaaagggtgtgatcaaaagcaatcccaaatatatgtga 48  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31320279 ccaaaaagggtgtgatcaaaagcaatcccaaatatatgtga 31320319  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 41411560 - 41411518
Alignment:
Q  8 ccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgact 50  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  41411560 ccaaaaagggtgtaatcaaaagcaatcccaaatatttgtgact 41411518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 21949933 - 21949895
Alignment:
Q  10 aaaaagggtgtgatcaaaagcaatcccaaatatatgtga 48  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  21949933 aaaaagggtgtaatcaaaagcaatcccaaatatttgtga 21949895  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 40275169 - 40275201
Alignment:
Q  10 aaaaagggtgtgatcaaaagcaatcccaaatat 42  Q
    ||||||||||| |||||||||||||||||||||    
T  40275169 aaaaagggtgtcatcaaaagcaatcccaaatat 40275201  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 242
Target Start/End: Complemental strand, 30559154 - 30559039
Alignment:
Q  126 gtgttgaataactagtcttttctggtagctttcagtggtggtggactttttaccacctttggtagttttgatcctttctcctttgaagtggtagacttca 225  Q
    |||||||||| |||| |||| ||||||||  |||||||  |||  |||| |||||| ||||||||||||||| || ||| |||||||||||||||||||     
T  30559154 gtgttgaatagctagactttactggtagcactcagtgggagtgatctttgtaccacttttggtagttttgatgctctct-ctttgaagtggtagacttct 30559056  T
Q  226 taggaggattcatgttc 242  Q
    | ||||||||| |||||    
T  30559055 tgggaggattcttgttc 30559039  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 30559400 - 30559343
Alignment:
Q  8 ccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactttcaagttgacagtt 65  Q
    ||||||||||||| |||||||||||||||||| || ||||||  ||| ||||||||||    
T  30559400 ccaaaaagggtgttatcaaaagcaatcccaaagatttgtgacggtcatgttgacagtt 30559343  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 49094583 - 49094543
Alignment:
Q  8 ccaaaaagggtgtgatcaaaagcaatcccaaatatatgtga 48  Q
    ||||||| ||||| ||||||||||||||||||||| |||||    
T  49094583 ccaaaaaaggtgttatcaaaagcaatcccaaatatttgtga 49094543  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 31610069 - 31610109
Alignment:
Q  10 aaaaagggtgtgatcaaaagcaatcccaaatatatgtgact 50  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  31610069 aaaaagggtgtgatcaaaagcaatcccaaatatatgcgact 31610109  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 2049016 - 2049050
Alignment:
Q  8 ccaaaaagggtgtgatcaaaagcaatcccaaatat 42  Q
    ||||||||||||| |||||||||||||||||||||    
T  2049016 ccaaaaagggtgttatcaaaagcaatcccaaatat 2049050  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 39735845 - 39735887
Alignment:
Q  8 ccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgact 50  Q
    |||| |||||||| |||||||||||||| ||||||||||||||    
T  39735845 ccaagaagggtgtaatcaaaagcaatccaaaatatatgtgact 39735887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 3958981 - 3958949
Alignment:
Q  10 aaaaagggtgtgatcaaaagcaatcccaaatat 42  Q
    ||||||||||| |||||||||||||||||||||    
T  3958981 aaaaagggtgtcatcaaaagcaatcccaaatat 3958949  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 42080729 - 42080695
Alignment:
Q  8 ccaaaaagggtgtgatcaaaagcaatcccaaatat 42  Q
    ||||||||||||| |||||||||||||||||||||    
T  42080729 ccaaaaagggtgtaatcaaaagcaatcccaaatat 42080695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 43403930 - 43403898
Alignment:
Q  10 aaaaagggtgtgatcaaaagcaatcccaaatat 42  Q
    ||||||||||| |||||||||||||||||||||    
T  43403930 aaaaagggtgtcatcaaaagcaatcccaaatat 43403898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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