View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796-Insertion-8 (Length: 433)
Name: NF0796-Insertion-8
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 1657066 - 1656645
Alignment:
| Q |
16 |
atatttgttgttattttctgttactttgtagtgtgtatcacgttttctcagctttttcaacaaatgttgttgcaagttggaaatctttgaatgtcaatta |
115 |
Q |
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| T |
1657066 |
atatttgttgttattttctgttactttgtagtgtgtatcacgttttctcagctttttcaacaaatgttgttgcaagttggaaatctttgaatgtcaatta |
1656967 |
T |
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| Q |
116 |
acacgatacatgttctatggagcaattcctggtgcatggtaaggtattttattgaaccctttgcttattggaatgtataaaatagtggaacaacattctc |
215 |
Q |
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| T |
1656966 |
acacgatacatgttctatggagcagttcctggtgcatggtaaggtattttattgaaccctttgcttattggaatgtataaaatagtggaacaacattctc |
1656867 |
T |
|
| Q |
216 |
tgaatctcgtgtaacaaacagaaaatcactcacatgctgctattgtttatatcttgtgactaaacctgtcaaattcaacactcacatgctgtagttatat |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1656866 |
tgaatctcatgtaacaaacagaaaatcactcacatgctgctattgtttatatcttgtgactaaacctgtcaaattcaacactcacatgctgtagttatat |
1656767 |
T |
|
| Q |
316 |
ctattatat----atatgtggcacaaatataatttcatatacttctcacatgatcttatcccttgcttaacattatggccaacattctctgcttccattt |
411 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1656766 |
ctattatatatatatatgtggcacaaatataatttcatatacttctcacatgatcttatcccttgcttaacattatggccaacattctctgcttccattt |
1656667 |
T |
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| Q |
412 |
gttcctttttgttctgtttaca |
433 |
Q |
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| T |
1656666 |
gttcctttttgttctgtttaca |
1656645 |
T |
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