View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796-Insertion-9 (Length: 399)
Name: NF0796-Insertion-9
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796-Insertion-9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 23 - 399
Target Start/End: Complemental strand, 20489017 - 20488639
Alignment:
| Q |
23 |
taattcattttatcaaattatgattgatgtcgacgtgtcaatttcagtgtcatatccatgtcaaagtagatgtgattgaatgtaaccaatattggttgtc |
122 |
Q |
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| T |
20489017 |
taattcattttatcaaataatgattgatgtcgacgtgtcaatttcagtgtcatatctgtgtcaaagtagatgtgattgaatgtaaccaatattggttgtc |
20488918 |
T |
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| Q |
123 |
nnnnnnnnn--tgtaaccaacaatatcgtgtgcgtattggacactcctatgtgtcggacactagacactccttcgatgtgaagtgtaagtacttaatgca |
220 |
Q |
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| T |
20488917 |
aaaaaaaaaaatgtaaccaccaatatcatgtgggtattggacactcttatgtgtcggacactagacacaccttcgatgtgaagtgtaagtacttaatgca |
20488818 |
T |
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| Q |
221 |
tatattcacatcatgctggtcctacacaaaaactcctcctcatcatataaaatcatggctagagttgttgattattctaaactgaccatcccacactact |
320 |
Q |
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| T |
20488817 |
tatattcacatcattctggtcctacacaaaaactcctcctcatcatataaaatcatggctagagttgttgattattctaaactgaccatcccacactact |
20488718 |
T |
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| Q |
321 |
ctcgatcatttcaaacccctttgatatcatcttgccatccttgatatagcctcatcctcttgttacatattcctaacca |
399 |
Q |
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| T |
20488717 |
ctcaatcatttcaaaaccctttgatatcatcttaccatccttgatatagcctcatcctcttgttacatattcctaacca |
20488639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 9878045 - 9878100
Alignment:
| Q |
7 |
agtgattacattctagtaattcattttatcaaattatgattgatgtcgacgtgtca |
62 |
Q |
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| T |
9878045 |
agtgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtca |
9878100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 34625779 - 34625719
Alignment:
| Q |
8 |
gtgattacattctagtaattcattttatcaaattatgattgatgtcgacgtgtcaatttca |
68 |
Q |
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|||||||||||| | ||||||||||| ||||||||| || | |||||| || ||||||||| |
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| T |
34625779 |
gtgattacattcaattaattcattttctcaaattattatcggtgtcgatgtatcaatttca |
34625719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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