View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0796_high_15 (Length: 519)
Name: NF0796_high_15
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 63 - 508
Target Start/End: Original strand, 27267963 - 27268408
Alignment:
| Q |
63 |
actgctacatgagcgtgatttaaaaccttggctaaaatttgttcatttgatggtttattaggacaacggattggtcccaattgtggaaccagagatcttg |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27267963 |
actgctacatgagcgtgatttaaaaccttggctaaaatttgttcatttgatggtttattaggacaacggattggtcccaattgtggaaccagagatcttg |
27268062 |
T |
|
| Q |
163 |
cttgatggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgtccaatttgagg |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27268063 |
cttgatggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgtccaatttgagg |
27268162 |
T |
|
| Q |
263 |
gcattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactataccctcaagctccttcacag |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27268163 |
gcattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactatatcctcaagctccttcacag |
27268262 |
T |
|
| Q |
363 |
gagaatccccccagccgtccctgatatcatggtatgtgaaactaaccaaatacaattttctttgtattccaaacttttatctttgttcatacaatatgaa |
462 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27268263 |
gagaatccccccagccgtccctggtatcatggtatgtgaaactaaccaaatacaattttctttgtattccaaacttttatctttgttcatacaatatgaa |
27268362 |
T |
|
| Q |
463 |
gcaacgacacaggtacagacaacaggcacgatactaacacgttcat |
508 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27268363 |
gcaacgacacaggtacagacaccaggcacgatactaacacgttcat |
27268408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 67 - 416
Target Start/End: Original strand, 27251181 - 27251530
Alignment:
| Q |
67 |
ctacatgagcgtgatttaaaaccttggctaaaatttgttcatttgatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgcttg |
166 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27251181 |
ctacatgagtgtgatttaaaaccttggctaaaatatgtccatttaatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgctgg |
27251280 |
T |
|
| Q |
167 |
atggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgtccaatttgagggcat |
266 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27251281 |
atggagaacatggtattgatagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgtccaatttgagggtat |
27251380 |
T |
|
| Q |
267 |
tctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactataccctcaagctccttcacaggaga |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27251381 |
tctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaagctccttcacaggaga |
27251480 |
T |
|
| Q |
367 |
atccccccagccgtccctgatatcatggtatgtgaaactaaccaaataca |
416 |
Q |
| |
|
|| ||||| || ||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
27251481 |
attccccctgctgtccctggtatcatggtatgtgacactaaccaaataca |
27251530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 67 - 416
Target Start/End: Original strand, 21195432 - 21195781
Alignment:
| Q |
67 |
ctacatgagcgtgatttaaaaccttggctaaaatttgttcatttgatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgcttg |
166 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21195432 |
ctacatgaatgtaatttaaaaccttggctaaaatatgtccatttaatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgctgg |
21195531 |
T |
|
| Q |
167 |
atggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgtccaatttgagggcat |
266 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21195532 |
atggagaacatggtattgacagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgtccaatttgagggtat |
21195631 |
T |
|
| Q |
267 |
tctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactataccctcaagctccttcacaggaga |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21195632 |
tctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaagctccttcacaggaga |
21195731 |
T |
|
| Q |
367 |
atccccccagccgtccctgatatcatggtatgtgaaactaaccaaataca |
416 |
Q |
| |
|
|| ||||| || ||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
21195732 |
attccccctgctgtccctggtatcatggtatgtgacactaaccaaataca |
21195781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 49364732 - 49364671
Alignment:
| Q |
242 |
agaacaatgtccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgag |
303 |
Q |
| |
|
|||||||||||| |||||||| ||| | |||||||||||||||||||| || || |||||| |
|
|
| T |
49364732 |
agaacaatgtcctttttgagggaattttgctcaagcctagcatggttacacctggtgctgag |
49364671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6846 times since January 2019
Visitors: 5772