View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_high_16 (Length: 497)
Name: NF0796_high_16
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 46704109 - 46703623
Alignment:
| Q |
1 |
tactcgccttccgtattttcacggattgtgatgagatctacattgtcatatcgagttttgtagccaggaaggctgtaacaaggtcggacattcgcatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46704109 |
tactcgccttccgtattttcacggattgtgatgagatctacattgtcatatcgagttttgtagccaggaaggctgtaacaaggtcggacattcgcatata |
46704010 |
T |
|
| Q |
101 |
aattaagttcttttcttagagtaaggtttaacgaacgatgtccttttccaataggggtagccattggccctttcaagccaaccctatttttccttatcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46704009 |
aattaagttcttttcttagagtaaggtttaacgaacgatgtccttttccaataggggtagccattggccctttcaagccaaccctatttttccttaccga |
46703910 |
T |
|
| Q |
201 |
ttctaaactttcccatgtaagaaagctctgcgttctagggtcaattgtggtccctacataatgctcttcccattcaattggaacttcagcggcttggaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46703909 |
ttctaaactttcccatgtaagaaagctctgcgttctagggtcaattgtagtccctacataatgctcttcccattcaattggaacttcagcggcttggaat |
46703810 |
T |
|
| Q |
301 |
acctaattatagcaatagtaaaaaattgacagcaagttacatttttattcaaaaaagaaaatcaactattatgaatatacataattcccaataagaaaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46703809 |
acctaattatagcaatagtaaaaaattgacagcaagttacatttttattcaaaaaagaaaatcaactattatgaatatacataattcccaataagaaaca |
46703710 |
T |
|
| Q |
401 |
aacaaagcaagagatacaaggaagaataaagtattacaaacattagaaagtgaccactctcggcagcaaaacagactccacattcat |
487 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46703709 |
aacaaagcaagagatataaggaagaataaagtattacaaacattagaaagtgaccactctcggcaacaaaacagactccacattcat |
46703623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 28177624 - 28177941
Alignment:
| Q |
1 |
tactcgccttccgtattttcacggattgtgatgagatctacattgtcatatcgagttttgtagccaggaaggctgtaacaaggtcggacattcgcatata |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||| ||| ||||||||| |||||||| ||||| ||||||| |
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| T |
28177624 |
tactcgccttcggtattttcacggattgtgatgagatcaacattatcgtatcgagttttgtatccattaaggctgtagcaaggtcgaacattggcatata |
28177723 |
T |
|
| Q |
101 |
aattaagttcttttcttagagtaaggtttaacgaacgatgtccttttccaataggggtagccattggccctttcaagccaaccctatttttccttatcga |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||| |||| ||| | || |
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|
| T |
28177724 |
aattaagctcttttcttagagtaaggtttagtgaacgatgccctttaccgataggggtggccattggccctttcaagccaaccttattccgcctaactga |
28177823 |
T |
|
| Q |
201 |
ttctaaactttcccatgtaagaaagctctgcgttctagggtcaattgtggtccctacataatgctcttcccattcaattggaacttcagcggcttggaat |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||| ||| | | ||||| ||||||||| |
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|
| T |
28177824 |
ttctaaactttcccatgtcagaaagctctttgttctagggtcaacttcagtccctacataatgctcttcccattctatttgcgcatcagcagcttggaat |
28177923 |
T |
|
| Q |
301 |
acctaattatagcaatag |
318 |
Q |
| |
|
| |||||||| ||||||| |
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|
| T |
28177924 |
atctaattattgcaatag |
28177941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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