View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0796_high_19 (Length: 443)
Name: NF0796_high_19
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_high_19 |
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| [»] scaffold0060 (2 HSPs) |
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| [»] scaffold1769 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 69550 - 69161
Alignment:
| Q |
1 |
acaaaaatgaacccttcaaatcattgtcatcctcaacgtatttgtttccatgttttacgcctctttacatgaattataccatattttgcgcctaacagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
69550 |
acaaaaatgaacccttcaaatcattgtcatcctcaacgtatttgtttccatgttttacgcctctttccatggattataccatattttgcgcctaacagtt |
69451 |
T |
|
| Q |
101 |
ggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaa |
200 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69450 |
ggaaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaa |
69351 |
T |
|
| Q |
201 |
attccactttccggaaaagtttatcctctatcaagtctattctttcaactatcttcaattctagagtgcctaaaatgctaaatttcaaaatttgaagacc |
300 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||| |
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| T |
69350 |
attccactttccagaaaagtttatcctctatcaagtctattctttcaactatcttgaattctagagtgcctaacatgctaaatttcaaaatctcaagacc |
69251 |
T |
|
| Q |
301 |
aactcataccttccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69250 |
aactcataccttccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactg |
69161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 305
Target Start/End: Complemental strand, 65443 - 65306
Alignment:
| Q |
172 |
ccaaaacaaaattaacatgataagttgaaattccactttccggaaaagtttat------cctctatcaagtctattctttcaactatcttcaattctaga |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||||||| ||||||||||||| |||| |||| |||| |
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|
| T |
65443 |
ccaaaacaaaattaacatgataagttgaaattccagtttttg--aaagtttattcttaacctctatcaagtttattctttcaactgtcttaaattgtaga |
65346 |
T |
|
| Q |
266 |
gtgcctaaaatgctaaatttcaaaatttgaagaccaactc |
305 |
Q |
| |
|
|||||||| |||||| |||||||||| | || |||||||| |
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| T |
65345 |
gtgcctaacatgctatatttcaaaatctcaaaaccaactc |
65306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 8442403 - 8442818
Alignment:
| Q |
1 |
acaaaaatgaacccttcaaatcattgtcatcctcaacgtatttgtttccatgttttacgcctctttacatgaattataccatattttgcgcctaacagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
8442403 |
acaaaaatgaacccttcaaatcattgtcatcctcaacgtatttgtttccatgttttacgcctctttacatggattataccatattttgcgcttaacagtc |
8442502 |
T |
|
| Q |
101 |
ggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8442503 |
ggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaa |
8442602 |
T |
|
| Q |
201 |
attccactttccggaaaagtttatcctctatcaagtctattctttcaactatcttcaattctagagtgcctaaaatgctaaatttcaaaatttgaagacc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
8442603 |
attccactttccggaaaagtttatcctctatcaagtctattctttcaactatcttgaattctagagtgcctaacatgctaaatttcaaaatctgaagacc |
8442702 |
T |
|
| Q |
301 |
aactcataccttccaatgctgctaaatttagca----------tcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactg |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8442703 |
aactcataccttccaatgctgctaaatttagcatcactaatattcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactg |
8442802 |
T |
|
| Q |
391 |
gatatttcttcaaatt |
406 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
8442803 |
gatatttcttcaaatt |
8442818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 313 - 414
Target Start/End: Original strand, 8348555 - 8348656
Alignment:
| Q |
313 |
ccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactggatatttcttcaaattctccta |
412 |
Q |
| |
|
||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||||| |||||||||| |
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| T |
8348555 |
ccaatgctgctaaatttagcatcgctgtagccggtatttgacatcattttgtactaatcagtgtatcacagaccactggcaatttcttcgaattctccta |
8348654 |
T |
|
| Q |
413 |
tg |
414 |
Q |
| |
|
|| |
|
|
| T |
8348655 |
tg |
8348656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 316
Target Start/End: Complemental strand, 7915665 - 7915473
Alignment:
| Q |
128 |
tcaaccaagttatttcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccggaaaagt----tta |
223 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||| |||| |||| |||||||| ||| | ||| |
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|
| T |
7915665 |
tcaaccatgttatttcaaaaatccctttaaacttatagaatgccccaaaacataattaatatgaaaagtagaaagtccacttt--ttaaatttattctta |
7915568 |
T |
|
| Q |
224 |
tcctctatcaagtctattctttcaactatcttcaat--tctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcataccttccaa |
316 |
Q |
| |
|
|||||||||||| ||| ||||||| | |||| ||| | |||||||| || ||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
7915567 |
acctctatcaagtgtatcctttcaattgtcttgaattgtatagagtgcagaacatgctaaatttcaaaatctcaagaccaactcataccttccaa |
7915473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 415
Target Start/End: Original strand, 8409801 - 8409905
Alignment:
| Q |
310 |
cttccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactggatatttcttcaaattctc |
409 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| | || ||| ||||||||||| |||||| ||| |||||| |||||||||||||||| |
|
|
| T |
8409801 |
cttccaatgctgctaaatttagcatcgctatagccggtatttggcttccttt-gtactaaacagcgtatcacagaccactggcaatttcttcaaattctc |
8409899 |
T |
|
| Q |
410 |
ctatgt |
415 |
Q |
| |
|
|||||| |
|
|
| T |
8409900 |
ctatgt |
8409905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 308
Target Start/End: Original strand, 8364280 - 8364505
Alignment:
| Q |
85 |
tttgcgcctaacagttggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattcctttaaacttataggatgccccaaaacaaaatt |
184 |
Q |
| |
|
|||| |||||| || ||||||||||| |||||||| || || ||| |||||||||| | ||| | |||| |||||| || |||| ||| |||||||| |
|
|
| T |
8364280 |
tttgtgcctaaaaggtggcaaattgcgttcactttccaatagttcagccaagttattcccaaagtcgcttttaacttacagaatgctccataacaaaata |
8364379 |
T |
|
| Q |
185 |
aacatgataagttgaaattccactttccggaaaagtttat------cctctatcaagtctattctttcaactatcttcaattctagagtgcctaaaatgc |
278 |
Q |
| |
|
|||||||||||||||| ||||| ||| | ||||||||| |||||||||||| ||||||||||||| || |||| ||||||||| || |||| |
|
|
| T |
8364380 |
aacatgataagttgaagttccagtttttg--aaagtttattcttaacctctatcaagtgtattctttcaactgtcg--aattgtagagtgccgaacatgc |
8364475 |
T |
|
| Q |
279 |
taaatttcaaaatttgaagaccaactcata |
308 |
Q |
| |
|
||||||||||||| | |||||||||||||| |
|
|
| T |
8364476 |
taaatttcaaaatctcaagaccaactcata |
8364505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 7915374 - 7915312
Alignment:
| Q |
310 |
cttccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaaca |
372 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
7915374 |
cttccaatgctgctaaatttagcatcgctatagccggtatttggcatgattttgtactaaaca |
7915312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 152 - 308
Target Start/End: Original strand, 8348331 - 8348494
Alignment:
| Q |
152 |
ctttaaacttataggatgccccaaaacaaaattaacatgata--agttgaaattccactttccggaaaagtttat------cctctatcaagtctattct |
243 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||| || |||| |||||| ||||| |||||| |||||| |
|
|
| T |
8348331 |
cttttaacttatagaatgccccaaaacaaaattaacctgatataagttgaaattccacatttttgaaa-gtttattcgtaacctctttcaagtgtattct |
8348429 |
T |
|
| Q |
244 |
ttcaactatcttcaattctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcata |
308 |
Q |
| |
|
||||||| ||| |||| |||||| || || |||||||| |||||||| | |||||||||||||| |
|
|
| T |
8348430 |
ttcaactgtctcgaattgtagagttccgaacatgctaaacttcaaaatctcaagaccaactcata |
8348494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: scaffold1769
Description:
Target: scaffold1769; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 629 - 230
Alignment:
| Q |
1 |
acaaaaatgaacccttcaaatcattgtcatcctcaacgtatttgtttccatgttttacgcctctttacatgaattataccatattttgcgcctaacagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
629 |
acaaaaatgaacccttcaaatcattgtcatcctcaacgtatttgtttccatgttttacgcctctttccatggattataccatattttgcgcttaacagtc |
530 |
T |
|
| Q |
101 |
ggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
529 |
ggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaa |
430 |
T |
|
| Q |
201 |
attccactttccggaaaagtttatcctctatcaagtctattctttcaactatcttcaattctagagtgcctaaaatgctaaatttcaaaatttgaagacc |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
429 |
attccactttcctgaaaagtttatcctctatcaagtctattctttcaactatcttgaattctagagtgcctaacatgctaaatttcaaaatctcaagacc |
330 |
T |
|
| Q |
301 |
aactcataccttccaatgctgctaaatttagcatc----------actataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactg |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329 |
aactcataccttccaatgctgctaaatttagcatcactaatattcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactg |
230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 387
Target Start/End: Complemental strand, 44460390 - 44460350
Alignment:
| Q |
347 |
tatttgacatcattttgtactaaacagtgtatcatagaaca |
387 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
44460390 |
tatttgacaacattttgtactaaatagtgtatcatggaaca |
44460350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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