View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0796_high_20 (Length: 427)
Name: NF0796_high_20
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_high_20 |
 | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
| [»] scaffold0141 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 398
Target Start/End: Original strand, 14555535 - 14555922
Alignment:
| Q |
11 |
cacagaatctcagggtatggataataacacagctttcgaaaattgttcaggaattcatttggtctccacctgtccagctgagacaattactctcaccagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14555535 |
cacagaatctcagggtatggataataacacagcttttgaaaattgttcaggaattcaattggtctccacctgtccagctgagacaattactctcaccagg |
14555634 |
T |
|
| Q |
111 |
aaccttgattgtcaaccagtccccaaagatgcaaacacaactcatcctagcactgctgcaatgaagagtgtaagcatattaaaaactgtgtggggggatt |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
14555635 |
aacctttattgtcaaccagtccccaaagatgcaaacacaactcatcctagcactgctgcaatgaagagtttaagcatattcaaaactgcgtggggggatt |
14555734 |
T |
|
| Q |
211 |
tagttgatgaagagacatctatgagtgacgagcaagagcggaatcttgaaggagattttgatgaggggagttcattcactccttttatatccagaaggca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
14555735 |
tagttgatgaagagacatctatgagtgacgagcaagagcagaatcttgaaggagattttgatgaggggagttcattcactccttttatgtccagaaggaa |
14555834 |
T |
|
| Q |
311 |
gaaaaaatataataagaaacatgctaataagccaagtgataaaggtgttcaaagcacaagcagtgatcatatacaaactcgttccaaa |
398 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14555835 |
gaaaaaatataataagaagcatgctaataagccaagtgataaaggtgttcaaagcacaagcagtgatcatatacaaactcgttccaaa |
14555922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 396
Target Start/End: Original strand, 13697976 - 13698165
Alignment:
| Q |
210 |
ttagttgatgaagagacatctatgagtgacgagcaagagcggaatcttgaaggagattttgatgaggggagttcattcactccttttatatccagaaggc |
309 |
Q |
| |
|
|||||||||||||||||| || |||||| || ||||||| || |||||||||||| |||| || ||||||| ||| ||||||||||| || ||||||| |
|
|
| T |
13697976 |
ttagttgatgaagagacaaataggagtgatgatcaagagcataaccttgaaggagatattgaggatgggagtttatttactccttttatgtcaagaaggc |
13698075 |
T |
|
| Q |
310 |
agaaaaaat---ataataagaaacatgctaataagccaagtgataaaggtgttcaaagcacaagcagtgatcatatacaaactcgttcca |
396 |
Q |
| |
|
|||| || | |||| ||||||||||| ||||||| || ||||| | || ||||||||||| ||||| || || |||||| |||||| |
|
|
| T |
13698076 |
agaagaagtctaataagaagaaacatgccaataagctaattgatacaatggtccaaagcacaagtagtgagcacattcaaactggttcca |
13698165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 394
Target Start/End: Original strand, 40274999 - 40275167
Alignment:
| Q |
230 |
tatgagtgacgagcaagagcggaatcttgaaggagattttgatgaggggagttcattcactccttttatatccagaaggcagaaaaaatat---aataag |
326 |
Q |
| |
|
||||||||| |||||||||| ||| ||||| || || ||| ||||| |||| ||||||||||||||| || ||||||||||| || || || ||| |
|
|
| T |
40274999 |
tatgagtgatgagcaagagcagaaccttgatagaaatattgcggagggaagtttattcactccttttatgtcaagaaggcagaagaataataagaagaag |
40275098 |
T |
|
| Q |
327 |
aaacatgctaataagccaagtgataaaggtgttcaa-agcacaagcagtgatcatatacaaactcgttc |
394 |
Q |
| |
|
|||||||| ||||||| || ||||| ||| |||||| | |||| ||||| || |||||||||||||| |
|
|
| T |
40275099 |
aaacatgccaataagctaaatgatacaggggttcaacaacacatttagtgaacaaatacaaactcgttc |
40275167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 394
Target Start/End: Complemental strand, 38346794 - 38346732
Alignment:
| Q |
332 |
tgctaataagccaagtgataaaggtgttcaaagcacaagcagtgatcatatacaaactcgttc |
394 |
Q |
| |
|
||||||||||| || ||||||||| |||| ||||||||| ||||| || ||||| |||||||| |
|
|
| T |
38346794 |
tgctaataagctaaatgataaaggggttccaagcacaagtagtgagcagatacatactcgttc |
38346732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 154 - 394
Target Start/End: Original strand, 18711 - 18954
Alignment:
| Q |
154 |
atcctagcactgctgcaatgaagagtgtaagcatattaaaaactgtgtggggggatttagttgatgaagagacatctatgagtgacgagcaagagcggaa |
253 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||| |||| ||||| || |||| |||||||||||| || |||||| |||||||||| ||| |
|
|
| T |
18711 |
atcctagtactgcttcaatgaagagtgtaagcatattaagaactcaatggggagacttagctgatgaagagacggatacgagtgatgagcaagagcagaa |
18810 |
T |
|
| Q |
254 |
tcttgaaggagattttgatgaggggagttcattcactccttttatatccagaaggcagaaaaaatataat---aagaaacatgctaataagccaagtgat |
350 |
Q |
| |
|
|||||||||||| |||| ||||| |||| ||||||||||||||| || ||||||||||| || ||||| ||||||||||| ||||||| || |||| |
|
|
| T |
18811 |
gcttgaaggagatattgaggagggaagtttattcactccttttatgtcaagaaggcagaagaataataataagaagaaacatgccaataagctaaatgat |
18910 |
T |
|
| Q |
351 |
aaaggtgttcaaagcacaagcagtgatcatatacaaactcgttc |
394 |
Q |
| |
|
| ||| ||||||||||||| | ||| || |||||||||||||| |
|
|
| T |
18911 |
acaggagttcaaagcacaattattgagcacatacaaactcgttc |
18954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 162 - 394
Target Start/End: Complemental strand, 3959218 - 3958983
Alignment:
| Q |
162 |
actgctgcaatgaagagtgtaagcatattaaaaactgtgtggggggatttagttgatgaagagacatctatgagtgacgagcaagagcggaatcttgaag |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| || |||| |||||||||||| ||||||||| | | |||||| ||| ||||||| |
|
|
| T |
3959218 |
actgctgcaatgaagagtgtaagcatattaagaactcaatggggagacttaggtgatgaagagacggatatgagtgatgtggaagagcagaaccttgaag |
3959119 |
T |
|
| Q |
262 |
gagattttgatgaggggagttcattcactccttttatatccagaaggcagaaaaaatataat---aagaaacatgctaataagccaagtgataaaggtgt |
358 |
Q |
| |
|
||||| |||| |||| |||| ||||||||||||||| || |||| |||||| || ||||| ||||||||||| ||||||| || ||||| ||| || |
|
|
| T |
3959118 |
gagatattgaggaggaaagtttattcactccttttatgtcaagaatgcagaagaataataataagaagaaacatgccaataagctaaatgatacaggggt |
3959019 |
T |
|
| Q |
359 |
tcaaagcacaagcagtgatcatatacaaactcgttc |
394 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||| |
|
|
| T |
3959018 |
tcaaagcacaaatagtgagcacatacaaactcgttc |
3958983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 397
Target Start/End: Original strand, 39735709 - 39735848
Alignment:
| Q |
258 |
gaaggagattttgatgaggggagttcattcactccttttatatccagaaggcagaaaaaatataataagaaacatgctaataagccaagtgataaaggtg |
357 |
Q |
| |
|
||||||||| |||| ||||| |||| ||| ||||||||||| || ||||||||||| || | ||||||||||||||||||||||| || ||||| || | |
|
|
| T |
39735709 |
gaaggagatattgaggagggaagtttatttactccttttatgtcaagaaggcagaagaagtctaataagaaacatgctaataagctaaatgatacagtgg |
39735808 |
T |
|
| Q |
358 |
ttcaaagcacaagcagtgatcatatacaaactcgttccaa |
397 |
Q |
| |
|
| ||| ||||||| ||||| || ||||||||||||||||| |
|
|
| T |
39735809 |
tccaaggcacaagtagtgagcacatacaaactcgttccaa |
39735848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 394
Target Start/End: Complemental strand, 1558601 - 1558419
Alignment:
| Q |
215 |
tgatgaagagacatctatgagtgacgagcaagagcggaatcttgaaggagattttgatgaggggagttcattcactccttttatatccagaaggcagaaa |
314 |
Q |
| |
|
|||||| |||||| |||| |||| |||||||||| | | |||||| ||||| |||| |||| |||| |||||||| |||||| || ||||||||||| |
|
|
| T |
1558601 |
tgatgaggagacaaatatgcgtgatgagcaagagcagcaccttgaaagagatattgagaagggaagtttattcactctttttatgtcaagaaggcagaag |
1558502 |
T |
|
| Q |
315 |
aaatataataaga---aacatgctaataagccaagtgataaaggtgttcaaagcacaagcagtgatcatatacaaactcgttc |
394 |
Q |
| |
|
|| ||||||||| || |||| |||||||||| ||||| ||| ||||||| |||| |||||| | |||||||||||||| |
|
|
| T |
1558501 |
aagaataataagaagcaatatgccaataagccaaatgatacaggggttcaaaacacattaagtgataacatacaaactcgttc |
1558419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 398
Target Start/End: Original strand, 2048983 - 2049020
Alignment:
| Q |
361 |
aaagcacaagcagtgatcatatacaaactcgttccaaa |
398 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
2048983 |
aaagcacaagtagtgagcatatacaaactcgttccaaa |
2049020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 394
Target Start/End: Original strand, 19167971 - 19168209
Alignment:
| Q |
154 |
atcctagcactgctgcaatgaagagtgtaagcatattaaaaactgtgtggggggatttagttgatgaagagacatctatgagtgacgagcaagagcggaa |
253 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| |||| ||||| || || |||||||||||| ||||||||| | |||||||| || |
|
|
| T |
19167971 |
atcctagtactgctgcaatgaagagtgttagcatattaagaactcaatggggagacttcactgatgaagagacggatatgagtgatgtgcaagagcataa |
19168070 |
T |
|
| Q |
254 |
tcttgaaggagattttgatgaggggagttcattcactccttttatatccagaaggcagaaaaaatataat---aagaaacatgctaataagccaagtgat |
350 |
Q |
| |
|
|||||||||||| |||| |||| | |||||||| |||||| |||| ||||||||| || ||||| ||||||||||| ||||||| || |||| |
|
|
| T |
19168071 |
ccttgaaggagatattga-----ggaggttattcactctttttatgtccaaaaggcagaagaagaataataagaagaaacatgccaataagctaaatgat |
19168165 |
T |
|
| Q |
351 |
aaaggtgttcaaagcacaagcagtgatcatatacaaactcgttc |
394 |
Q |
| |
|
| ||| ||||||||||||| | ||| || |||||||||||||| |
|
|
| T |
19168166 |
acaggagttcaaagcacaattattgagcacatacaaactcgttc |
19168209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 394
Target Start/End: Original strand, 26155140 - 26155307
Alignment:
| Q |
230 |
tatgagtgacgagcaagagcggaatcttgaaggagattttgatgaggggagttcattcactccttttatatccagaaggcagaaaaaatat---aataag |
326 |
Q |
| |
|
||||||||| |||||||||| ||| |||||| ||||| |||| ||||| |||| ||||||||||||||| || ||||||||||| || || || ||| |
|
|
| T |
26155140 |
tatgagtgatgagcaagagcagaaccttgaaagagatattgaggagggaagtttattcactccttttatgtcaagaaggcagaagaagaataaaaagaag |
26155239 |
T |
|
| Q |
327 |
aaacatgctaataagccaagtgataaaggtgttcaaagcacaagcagtgatcatatacaaactcgttc |
394 |
Q |
| |
|
|||||| | ||||||| || ||||| ||| |||||| |||| ||||| || |||||||||||||| |
|
|
| T |
26155240 |
aaacatcccaataagctaaatgatacaggggttcaacacacatttagtgaacacatacaaactcgttc |
26155307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 30559595 - 30559502
Alignment:
| Q |
14 |
agaatctcagggtatggataataacacagctttcgaaaattgttcaggaattcatttggtctccacctgtccagctgagacaattactctcacca |
108 |
Q |
| |
|
||||||||||||||||||||| || |||||||| ||||||||||||||| | || |||||||||| || ||| |||||| ||| |||||||||| |
|
|
| T |
30559595 |
agaatctcagggtatggataacaaaacagcttttgaaaattgttcaggagtcca-atggtctccacatgcccaactgagaaaataactctcacca |
30559502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 397
Target Start/End: Original strand, 8424940 - 8425082
Alignment:
| Q |
258 |
gaaggagattttgatgaggggagttcattcactccttttatatccagaaggcagaaaaaat---ataataagaaacatgctaataagccaagtgataaag |
354 |
Q |
| |
|
||||| ||| |||| || ||||||| ||| |||||||||||||| | ||||||||| || | |||| ||||||||||| ||||||| || ||||| | |
|
|
| T |
8424940 |
gaaggggatattgaggatgggagtttatttactccttttatatcaaaaaggcagaagaagtctaataagaagaaacatgccaataagctaaatgatacaa |
8425039 |
T |
|
| Q |
355 |
gtgttcaaagcacaagcagtgatcatatacaaactcgttccaa |
397 |
Q |
| |
|
|||||||| | ||| ||||| || ||||||||||||||||| |
|
|
| T |
8425040 |
tggttcaaagtataaggagtgagcacatacaaactcgttccaa |
8425082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 398
Target Start/End: Original strand, 38836138 - 38836175
Alignment:
| Q |
361 |
aaagcacaagcagtgatcatatacaaactcgttccaaa |
398 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
38836138 |
aaagcacaagtagtgagcatatacaaactcgttccaaa |
38836175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 397
Target Start/End: Complemental strand, 11888359 - 11888215
Alignment:
| Q |
256 |
ttgaaggagattttgatgaggggagttcattcactccttttatatccagaaggcagaaaaaatataataagaa---acatgctaataagccaagtgataa |
352 |
Q |
| |
|
||||||| ||| |||| || ||||||| ||| ||||||||||| || | ||||||||| || | ||||||||| |||||| ||||||| || ||||| |
|
|
| T |
11888359 |
ttgaaggggatattgaggatgggagtttatttactccttttatgtcgaaaaggcagaagaagtctaataagaagaaacatgccaataagctaaatgatac |
11888260 |
T |
|
| Q |
353 |
aggtgttcaaagcacaagcagtgatcatatacaaactcgttccaa |
397 |
Q |
| |
|
| |||||||| || || ||||| |||||||||| ||||||||| |
|
|
| T |
11888259 |
aatggttcaaagtactagtagtgagcatatacaaattcgttccaa |
11888215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 313
Target Start/End: Original strand, 18979707 - 18979805
Alignment:
| Q |
215 |
tgatgaagagacatctatgagtgacgagcaagagcggaatcttgaaggagattttgatgaggggagttcattcactccttttatatccagaaggcagaa |
313 |
Q |
| |
|
|||||| |||||| |||| |||| |||||||||| | | |||||| ||||| |||| ||||| |||| ||||||| ||||| | || ||||||||||| |
|
|
| T |
18979707 |
tgatgatgagacagatatgcgtgatgagcaagagcagcaccttgaaagagatattgaggagggaagtttattcacttcttttttgtcaagaaggcagaa |
18979805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 313
Target Start/End: Complemental strand, 7675 - 7563
Alignment:
| Q |
201 |
tggggggatttagttgatgaagagacatctatgagtgacgagcaagagcggaatcttgaaggagattttgatgaggggagttcattcactccttttatat |
300 |
Q |
| |
|
||||| || |||||||||||||| ||| || |||||| || ||||||| || |||||||| || |||| || ||||||| ||| ||||||||||| | |
|
|
| T |
7675 |
tggggagacttagttgatgaagaaacagataggagtgatgatcaagagcataactttgaaggatatattgaggatgggagtttatttactccttttatgt |
7576 |
T |
|
| Q |
301 |
ccagaaggcagaa |
313 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
7575 |
caagaaggcagaa |
7563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 397
Target Start/End: Complemental strand, 16710 - 16568
Alignment:
| Q |
258 |
gaaggagattttgatgaggggagttcattcactccttttatatccagaaggcagaaaaaat---ataataagaaacatgctaataagccaagtgataaag |
354 |
Q |
| |
|
||||| ||| |||| || ||||||| ||| |||||||||||||| | ||||||||| || | |||| ||||||||||| ||||||| || ||||| | |
|
|
| T |
16710 |
gaaggggatattgaggatgggagtttatttactccttttatatcgaaaaggcagaagaagtctaataagaagaaacatgccaataagctaaatgatacaa |
16611 |
T |
|
| Q |
355 |
gtgttcaaagcacaagcagtgatcatatacaaactcgttccaa |
397 |
Q |
| |
|
||||||| ||||| ||||| || ||| ||||||||||||| |
|
|
| T |
16610 |
tggttcaaaatacaaggagtgagcacatataaactcgttccaa |
16568 |
T |
|
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