View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_high_27 (Length: 352)
Name: NF0796_high_27
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 37912404 - 37912647
Alignment:
| Q |
1 |
accgtctttggcgaattcggaaaggacaaagagagcacaattagcggaagaacgatctgaacgagaagatgaaaaagaggatttgagaagatgaatacga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37912404 |
accgtctttggcgaattcggaaaggacaaagagagcacaattagcagaagaacgatctgaacaagaagatgaaaaagaggatttgagaagatgaatacga |
37912503 |
T |
|
| Q |
101 |
ttggaaatatcagtaggaagatctaaacgacgaggtttggttgttacttcttctacttcatcttcttcagtccaatcgagttttctcttcaaactttggg |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37912504 |
ttggaaatatcagtgggaagatctaaacgacgaggtttggttgttacttcttctacttcatcttcttcagtccaatcgagttttctcttcaaactttggg |
37912603 |
T |
|
| Q |
201 |
tgttgttacgaagatccatcaggttggataagagtctggtggtg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37912604 |
tgttgttacgaagatccatcaggttggataagagtctggtggtg |
37912647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 37905893 - 37905922
Alignment:
| Q |
1 |
accgtctttggcgaattcggaaaggacaaa |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37905893 |
accgtctttggcgaattcggaaaggacaaa |
37905922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 26464122 - 26464210
Alignment:
| Q |
8 |
ttggcgaattcggaaaggacaaagagagcacaattagcggaagaacgatctgaacgagaagatgaaaaagaggatttgagaagatgaat |
96 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||| || |||| ||||||| ||||||| ||||||||||| |||||| |
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| T |
26464122 |
ttggcgaattcggagaggacgaagagagcacaattagcggaagaacaatttgaaggagaagacgaaaaagtggatttgagaaaatgaat |
26464210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 31197858 - 31197946
Alignment:
| Q |
8 |
ttggcgaattcggaaaggacaaagagagcacaattagcggaagaacgatctgaacgagaagatgaaaaagaggatttgagaagatgaat |
96 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||| | |||| ||||||| |||||| |||||||||||||||||| |
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| T |
31197858 |
ttggcgaattcggagaggacggagagagcacaattagcggaagaacggtttgaaggagaagacaaaaaagcggatttgagaagatgaat |
31197946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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