View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796_high_31 (Length: 315)

Name: NF0796_high_31
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796_high_31
NF0796_high_31
[»] chr2 (24 HSPs)
chr2 (12-286)||(2165829-2166094)
chr2 (12-107)||(2155873-2155968)
chr2 (23-103)||(22011353-22011433)
chr2 (82-168)||(27952316-27952402)
chr2 (82-166)||(27956154-27956238)
chr2 (82-166)||(2155972-2156056)
chr2 (82-166)||(22011441-22011525)
chr2 (82-166)||(31636342-31636426)
chr2 (82-166)||(31634109-31634193)
chr2 (243-286)||(2152685-2152728)
chr2 (21-107)||(31634020-31634105)
chr2 (21-107)||(31636253-31636338)
chr2 (82-139)||(15129395-15129452)
chr2 (82-135)||(21772380-21772433)
chr2 (16-107)||(27956242-27956332)
chr2 (82-145)||(33655633-33655696)
chr2 (82-139)||(36647298-36647355)
chr2 (16-107)||(33655538-33655629)
chr2 (28-107)||(44675310-44675389)
chr2 (16-107)||(27952406-27952496)
chr2 (82-139)||(8294583-8294641)
chr2 (82-120)||(33051623-33051661)
chr2 (82-139)||(28737911-28737968)
chr2 (82-145)||(5171605-5171669)
[»] scaffold0110 (3 HSPs)
scaffold0110 (16-166)||(46733-46882)
scaffold0110 (81-166)||(45262-45347)
scaffold0110 (18-107)||(45350-45438)
[»] chr8 (25 HSPs)
chr8 (25-166)||(18468598-18468737)
chr8 (12-107)||(23570490-23570585)
chr8 (12-107)||(23573489-23573584)
chr8 (12-107)||(6845243-6845337)
chr8 (82-166)||(22921850-22921934)
chr8 (81-153)||(23570588-23570660)
chr8 (82-166)||(6845341-6845425)
chr8 (82-166)||(22512046-22512130)
chr8 (82-166)||(22519346-22519430)
chr8 (82-166)||(22926648-22926732)
chr8 (82-166)||(42891664-42891748)
chr8 (12-107)||(18180771-18180865)
chr8 (12-107)||(22926736-22926830)
chr8 (82-168)||(37189871-37189957)
chr8 (82-139)||(42890397-42890454)
chr8 (16-107)||(22921938-22922028)
chr8 (12-73)||(26150596-26150657)
chr8 (82-137)||(2687747-2687803)
chr8 (94-153)||(22520812-22520871)
chr8 (48-107)||(42891752-42891811)
chr8 (81-139)||(2189748-2189806)
chr8 (21-107)||(22512134-22512219)
chr8 (25-107)||(22520887-22520968)
chr8 (16-107)||(37189778-37189867)
chr8 (82-145)||(16598254-16598318)
[»] chr7 (17 HSPs)
chr7 (17-107)||(859244-859334)
chr7 (17-107)||(1217248-1217338)
chr7 (82-166)||(13882686-13882770)
chr7 (82-166)||(13886159-13886243)
chr7 (82-167)||(859155-859240)
chr7 (82-167)||(1217159-1217244)
chr7 (12-109)||(13886274-13886370)
chr7 (12-107)||(13882774-13882868)
chr7 (82-160)||(1220446-1220524)
chr7 (21-107)||(31577271-31577356)
chr7 (25-107)||(1220528-1220603)
chr7 (93-136)||(4888715-4888758)
chr7 (82-144)||(27309636-27309699)
chr7 (12-66)||(5678340-5678394)
chr7 (12-66)||(5703392-5703446)
chr7 (93-153)||(1786699-1786760)
chr7 (100-153)||(29175780-29175833)
[»] chr3 (20 HSPs)
chr3 (17-107)||(3068963-3069053)
chr3 (22-107)||(3063825-3063910)
chr3 (12-105)||(53012932-53013025)
chr3 (12-107)||(43306760-43306855)
chr3 (22-107)||(43304048-43304133)
chr3 (82-166)||(5128914-5128998)
chr3 (82-167)||(43303959-43304044)
chr3 (82-166)||(43306672-43306756)
chr3 (12-71)||(41218710-41218769)
chr3 (82-166)||(3063737-3063821)
chr3 (36-107)||(4580493-4580563)
chr3 (16-107)||(5128820-5128910)
chr3 (12-70)||(25857697-25857756)
chr3 (101-166)||(3068875-3068940)
chr3 (38-107)||(40593531-40593598)
chr3 (21-147)||(45168338-45168465)
chr3 (36-107)||(19949933-19950003)
chr3 (12-71)||(39913352-39913412)
chr3 (36-107)||(20398488-20398558)
chr3 (91-145)||(52708858-52708913)
[»] chr6 (16 HSPs)
chr6 (21-104)||(29340897-29340980)
chr6 (82-166)||(3536039-3536123)
chr6 (82-166)||(3542250-3542334)
chr6 (12-107)||(3535941-3536035)
chr6 (12-107)||(3542152-3542246)
chr6 (82-166)||(30049921-30050005)
chr6 (82-147)||(30052208-30052273)
chr6 (82-162)||(29340810-29340890)
chr6 (16-107)||(30049827-30049917)
chr6 (16-107)||(30052114-30052204)
chr6 (21-103)||(3565652-3565733)
chr6 (82-139)||(33615530-33615588)
chr6 (23-68)||(19232241-19232286)
chr6 (114-169)||(29342061-29342116)
chr6 (14-107)||(11190408-11190498)
chr6 (94-137)||(1127271-1127315)
[»] chr4 (14 HSPs)
chr4 (12-107)||(22716564-22716659)
chr4 (12-107)||(13085180-13085274)
chr4 (12-107)||(22691217-22691312)
chr4 (12-107)||(22988558-22988653)
chr4 (82-145)||(6659351-6659414)
chr4 (21-107)||(6659418-6659503)
chr4 (21-103)||(13086227-13086308)
chr4 (82-168)||(19935492-19935577)
chr4 (21-70)||(4053062-4053111)
chr4 (82-165)||(7723665-7723746)
chr4 (21-107)||(9596857-9596942)
chr4 (82-134)||(21433594-21433647)
chr4 (27-55)||(24667609-24667637)
chr4 (22-58)||(34949126-34949162)
[»] chr1 (14 HSPs)
chr1 (12-107)||(13444076-13444171)
chr1 (82-166)||(13443988-13444072)
chr1 (82-167)||(50857443-50857528)
chr1 (12-107)||(13441687-13441782)
chr1 (82-167)||(8931225-8931310)
chr1 (38-107)||(50857532-50857600)
chr1 (21-107)||(12033639-12033724)
chr1 (99-145)||(13441627-13441673)
chr1 (37-107)||(40804591-40804660)
chr1 (28-107)||(8931143-8931221)
chr1 (91-120)||(10927206-10927235)
chr1 (38-107)||(12486314-12486381)
chr1 (89-117)||(8965803-8965831)
chr1 (94-139)||(43681478-43681525)
[»] chr5 (7 HSPs)
chr5 (82-167)||(40778785-40778870)
chr5 (82-165)||(21848966-21849049)
chr5 (36-107)||(19677219-19677289)
chr5 (16-107)||(40778874-40778964)
chr5 (82-121)||(19497349-19497388)
chr5 (89-139)||(22440870-22440920)
chr5 (91-139)||(492581-492630)
[»] scaffold0054 (2 HSPs)
scaffold0054 (82-138)||(37716-37772)
scaffold0054 (82-117)||(49327-49362)
[»] scaffold0240 (1 HSPs)
scaffold0240 (93-139)||(16063-16109)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 2165829 - 2166094
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaaactt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2165829 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgttgcttgcaaactt 2165928  T
Q  112 gttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtcaataaggacataaacatgtcacnnnnnnnatgaggaggaaaaatca 211  Q
    |||||||| |||||| ||||| |||||| |||||||| ||| | ||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  2165929 gttcttttctatctaggtttaacgcttgttaaccctacgctgtcgtactgcgtcaataaggacataaacatgtcac-ttttttatgaggaggaaaaatca 2166027  T
Q  212 aagttgcttctaagtttgtagggacgagtatgacgtctcattctatcttggttctaaataaatgaatgattcaac 286  Q
    |||||||        |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2166028 aagttgc--------ttgtagggacgagtatgacgtctcattctatcttagttctaaataaatgaatgattcaac 2166094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 2155873 - 2155968
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||||||||| || ||||||| ||||||  ||||||||||| |||||||||||||||    
T  2155873 agagacacacttttattcaataataatattcaagacttttctctcaattctgatggattccgaaaacccttattttgataggtttgtcgcttgcaa 2155968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 22011353 - 22011433
Alignment:
Q  23 tttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgctt 103  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||  ||||||||||| |||||||||||    
T  22011353 tttattcattaataatattcgagacttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgctt 22011433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 27952402 - 27952316
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtcaat 168  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||  |||||||||||||    
T  27952402 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcaat 27952316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 27956238 - 27956154
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||  |||||||||||    
T  27956238 tattttcataggtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 27956154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 2155972 - 2156056
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | |||||||||||| |||||||||||||||| |||||| |||||||||||| |||||||| ||||  |||||||||||    
T  2155972 tattttcacaagtttgtcgctcgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 2156056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 22011441 - 22011525
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||| ||||||||||||||||||| |||||| |||||||||||| |||||||| ||||  |||||||||||    
T  22011441 tattttcacaagtttgtcacttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 22011525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 31636342 - 31636426
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | |||||||||||||||||||| |||||||| |||||| |||||||||||| |||||||| ||||  |||||||||||    
T  31636342 tattttcacaagtttgtcgcttgcaaactagttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 31636426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 31634109 - 31634193
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | |||||||||||| |||||||||||||||| |||||| |||||||| ||| |||||||| ||||  |||||||||||    
T  31634109 tattttcacaagtttgtcgctagcaaacttgttcttttctatctaggtttagcgtttgctaaccctacgcttccgtactgcgtca 31634193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 2152685 - 2152728
Alignment:
Q  243 gacgtctcattctatcttggttctaaataaatgaatgattcaac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2152685 gacgtctcattctatcttggttctaaataaatgaatgattcaac 2152728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 31634020 - 31634105
Alignment:
Q  21 tttttattcattaataatattcgagacttttctctcaattt-tggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||||||||||||||| |||| |||||||||||||| |||||||||| |||| | || ||||||||| |||||||||||||||    
T  31634020 tttttattcattaataatatttgaga-ttttctctcaatttctggtggattccgaaaccctt-attttgataggtttgtcgcttgcaa 31634105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 31636253 - 31636338
Alignment:
Q  21 tttttattcattaataatattcgagacttttctctcaattt-tggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||||||||||||||||||||| ||| |||||||||||||| |||||||||| | || | || ||||||||| |||||||||||||||    
T  31636253 tttttattcattaataatattcaaga-ttttctctcaatttctggtggattccggaaccctt-attttgataggtttgtcgcttgcaa 31636338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 15129395 - 15129452
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttg 139  Q
    |||||| | ||||||||||||||| ||||||||||||| |||||| ||||||||||||    
T  15129395 tattttcacaagtttgtcgcttgcgaacttgttcttttctatctaggtttagcgcttg 15129452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 21772380 - 21772433
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcg 135  Q
    |||||| |||||||||||||||||||||||||| ||||  ||||||||||||||    
T  21772380 tattttcataagtttgtcgcttgcaaacttgtttttttcaatctaagtttagcg 21772433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 27956332 - 27956242
Alignment:
Q  16 acacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| ||||| ||| | ||||||||| ||||||||||||| |||||||||| | ||||  ||||||| ||| |||||||||||||||    
T  27956332 acactttttgattcaataaaattattcgaga-ttttctctcaattctggtggattccggaaacccttattttcataggtttgtcgcttgcaa 27956242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 33655633 - 33655696
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataacc 145  Q
    |||||| | |||||||||||||||||||||||  |||| |||||| |||||||||||| |||||    
T  33655633 tattttcacaagtttgtcgcttgcaaacttgtatttttctatctaggtttagcgcttgctaacc 33655696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 36647298 - 36647355
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttg 139  Q
    |||||| | |||||||||||||||||||||||||||||  ||| | ||||||||||||    
T  36647298 tattttcacaagtttgtcgcttgcaaacttgttcttttcaatcgaggtttagcgcttg 36647355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 33655538 - 33655629
Alignment:
Q  16 acacatttttattcattaataatattcgagacttttctctcaattt-tggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| ||||| ||| | ||||||||| |||||||||||||| |||||||||| | ||||  ||||||||||| |||||||| ||||||    
T  33655538 acactttttcattcaataaaattattcgaga-ttttctctcaatttctggtggattccggaaacccttattttgataggtttgtcgtttgcaa 33655629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 44675389 - 44675310
Alignment:
Q  28 tcattaataatattcgagactttt-ctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||| ||||||| |||||| ||||||||| |||||||||| ||||||  ||| ||||||| || ||||||||||||    
T  44675389 tcattaatagtattcgaaactttttctctcaattctggtggattccgaaaaccctta-tttgataggtatgtcgcttgcaa 44675310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 27952496 - 27952406
Alignment:
Q  16 acacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| ||||| ||| | ||||||||| ||||||||||||| |||||||||| | ||||  ||||||| | | |||||||||||||||    
T  27952496 acactttttgattcaataaaattattcgaga-ttttctctcaattctggtggattccggaaacccttattttcaaaggtttgtcgcttgcaa 27952406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 8294583 - 8294641
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttctt-ttttatctaagtttagcgcttg 139  Q
    |||||| | ||||||||||||||||||| ||||||| || |||||||||||||| ||||    
T  8294583 tatttttacaagtttgtcgcttgcaaacgtgttcttcttctatctaagtttagcacttg 8294641  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 33051623 - 33051661
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttt 120  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  33051623 tattttcaaaagtttgtcgcttgcaaacttgttcttttt 33051661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 28737911 - 28737968
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttg 139  Q
    |||||| | |||||||||||||||||||||| ||||||  ||||| ||||||| ||||    
T  28737911 tattttcaaaagtttgtcgcttgcaaacttgctcttttcaatctaggtttagcacttg 28737968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 5171669 - 5171605
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgt-tcttttttatctaagtttagcgcttgataacc 145  Q
    |||||| | ||||||||||||||||||||||| ||||||  |||||  ||||||||||| |||||    
T  5171669 tatttttacaagtttgtcgcttgcaaacttgtctcttttcaatctagatttagcgcttgttaacc 5171605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 46882 - 46733
Alignment:
Q  16 acacatttttattcattaataatattcgagacttttctctcaatttt-ggtggattctgaaaacatttattttgataagtttgtcgcttgcaaacttgtt 114  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| | || | || ||||||||| ||||||||||||||||||||||    
T  46882 acacttttttattcattaataatattcgaga-ttttctctcaatttttggtggattccggaacc-ttaattttgataggtttgtcgcttgcaaacttgtt 46785  T
Q  115 cttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    ||||| |||||| |||||||||||| | |||||| ||||  |||||||||||    
T  46784 cttttctatctaggtttagcgcttgctcaccctacgcttccgtactgcgtca 46733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 45347 - 45262
Alignment:
Q  81 ttattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||  |||||| ||||    
T  45347 ttattttcataagtttgtcgcttgcaaacttgttctttcttatctaattttagcgcttgctaaccctacgcttccgtactgtgtca 45262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 45438 - 45350
Alignment:
Q  18 acatttttattcattaataatattcgagacttttctctcaattt-tggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||  |||  ||||||||||| |||||||||||||||    
T  45438 acatttttattcattaataatattcgaga-ttttctctcaatttctggtggattctg-gaacccttattttgataggtttgtcgcttgcaa 45350  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 18468598 - 18468737
Alignment:
Q  25 tattcattaataatattcgagacttttctctcaattt-tggtggattctgaaaacatttattttgataagtttgtcgcttgcaaacttgttcttttttat 123  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| | || | |  ||||| | ||||||||||||||||| ||||||||||| ||     
T  18468598 tattcattaataatattcgagacttttctctcaatttctggtggattccggaaccct--attttcacaagtttgtcgcttgcaagcttgttcttttctac 18468695  T
Q  124 ctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    ||| |||||||||||| ||||||| ||||| ||||||||||||    
T  18468696 ctaggtttagcgcttgctaaccct-tgcttctgtactgcgtca 18468737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 23570490 - 23570585
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| |||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||||  ||||||||||| |||||||||||||||    
T  23570490 agaggcacacttttattcataaataatattcgagacttttctctcaattctggtgcattctggaaacccttattttgataggtttgtcgcttgcaa 23570585  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 23573489 - 23573584
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||  | ||||  ||||||||||| |||||||||||||||    
T  23573489 agaggcacacttttattcattaataatattcgagacttttctctcaatttaggtggatttcggaaacccttattttgataggtttgtcgcttgcaa 23573584  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 6845243 - 6845337
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaa-ttttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||||||| | ||||  ||||||||||| |||||||||||||||    
T  6845243 agagacactttttgattcattaataatattcgaga-ttttctctcaatttttggtggattccg-aaacccttattttgataggtttgtcgcttgcaa 6845337  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 22921934 - 22921850
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||||||||||| ||||||| |||||| |||||||||||| |||||||| ||||  |||||||||||    
T  22921934 tattttcacaagtttgtcgcttgcaaacttattcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 22921850  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 23570588 - 23570660
Alignment:
Q  81 ttattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgctt 153  Q
    ||||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  23570588 ttattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgctt 23570660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 6845341 - 6845425
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | |||||| ||||||| |||||||||||||| |||||| |||||||||||| |||||||| ||||  |||||||||||    
T  6845341 tattttcacaagtttatcgcttgtaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 6845425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 22512130 - 22512046
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||  |||  |||||||||||    
T  22512130 tattttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgctaaccctacacttccgtactgcgtca 22512046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 22519430 - 22519346
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||  |||  |||||||||||    
T  22519430 tattttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgctaaccctacacttccgtactgcgtca 22519346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 22926732 - 22926648
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||  |||||||| ||||  ||||| |||||    
T  22926732 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgctttctaaccctacgcttccgtactacgtca 22926648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 42891748 - 42891664
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||| || ||||| ||||  ||| |||||||    
T  42891748 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctagccctacgcttccgtattgcgtca 42891664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 18180865 - 18180771
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| ||| |||| ||||| ||| | ||||||||| ||||||||||||| |||||||||||| ||||  ||||||||||| |||||||||||||||    
T  18180865 agaggcactttttgattcaataaaattattcgaga-ttttctctcaattctggtggattctggaaacccttattttgataggtttgtcgcttgcaa 18180771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 22926830 - 22926736
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||| ||| ||||| ||| ||||||||||| ||||||||||||| ||||||||||   ||||  ||||||||||| |||||||||||||||    
T  22926830 agagacacaatttaattcaataaaaatattcgaga-ttttctctcaattctggtggattccagaaacccttattttgataggtttgtcgcttgcaa 22926736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 37189871 - 37189957
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtcaat 168  Q
    |||||| | ||||||||||||||||||||| ||||||| ||||||  ||||| ||||| |||||||| ||||  |||||||||||||    
T  37189871 tattttcacaagtttgtcgcttgcaaacttattcttttctatctagttttagagcttgctaaccctaagcttccgtactgcgtcaat 37189957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 42890397 - 42890454
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttg 139  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  42890397 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttg 42890454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 22922028 - 22921938
Alignment:
Q  16 acacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| ||||| ||| | ||||||||| ||||||||||||| |||||||||| | ||||  ||||||||||| |||||||||||||||    
T  22922028 acaccttttgattcaataaaattattcgaga-ttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttgcaa 22921938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 26150596 - 26150657
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctg 73  Q
    |||| ||| |||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  26150596 agaggcactttttcattcaataaaaatattcgagacttttctctcaattctggtggattctg 26150657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 2687747 - 2687803
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttt-tatctaagtttagcgct 137  Q
    |||||| | |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  2687747 tattttcacaagtttgtcgcttgcaaacttgttctttttctatctaggtttagcgct 2687803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 22520871 - 22520812
Alignment:
Q  94 tttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgctt 153  Q
    ||||||||||||||||||| |||||| || ||| |||||||||||| |||||||| ||||    
T  22520871 tttgtcgcttgcaaacttgatcttttctacctaggtttagcgcttgctaaccctacgctt 22520812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 42891811 - 42891752
Alignment:
Q  48 ttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||||||| |||||||||| | ||||  ||||||||||| |||||||||||||||    
T  42891811 ttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttgcaa 42891752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 2189806 - 2189748
Alignment:
Q  81 ttattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttg 139  Q
    ||||||| | |||||||||||||||||||||||||||||  ||| | ||||||||||||    
T  2189806 ttattttcacaagtttgtcgcttgcaaacttgttcttttcaatcgaggtttagcgcttg 2189748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 22512219 - 22512134
Alignment:
Q  21 tttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||||||||| ||| | ||||||||| ||||||||||||| |||||||||  | ||||  ||||||||||| ||||||| |||||||    
T  22512219 tttttattcaataaaattattcgaga-ttttctctcaattctggtggatttcggaaacccttattttgataggtttgtcacttgcaa 22512134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 22520968 - 22520887
Alignment:
Q  25 tattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||||| ||| | ||||||||| ||||||||||||| |||||||||| | ||||  ||||||||||| ||||||| |||||||    
T  22520968 tattcaataaaattattcgaga-ttttctctcaattctggtggattccggaaacccttattttgataggtttgtcacttgcaa 22520887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 37189778 - 37189867
Alignment:
Q  16 acacatttttattcattaataatattcgagacttttctctcaattt-tggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| ||||||||||||||||||||||||||  ||| ||||||||| ||||||||| |   |||  ||||||||||| |||||||||||||||    
T  37189778 acacttttttattcattaataatattcgaga--tttttctcaatttctggtggatt-tcggaacccttattttgataggtttgtcgcttgcaa 37189867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 16598254 - 16598318
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttg-ttcttttttatctaagtttagcgcttgataacc 145  Q
    |||||| | ||||||||||| |||||||||| |||||| | |||||||||||||||||| |||||    
T  16598254 tattttcacaagtttgtcgcgtgcaaacttgtttctttctaatctaagtttagcgcttgctaacc 16598318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 859334 - 859244
Alignment:
Q  17 cacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||||||||||||||||||| |||||||||||||||||| |||||||||| | |||| |||||||||||| |||||||||||||||    
T  859334 cacacttttattcattaataatatttgagacttttctctcaattctggtggattccggaaacctttattttgataggtttgtcgcttgcaa 859244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 1217338 - 1217248
Alignment:
Q  17 cacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||||||||||||||||||| |||||||||||||||||| |||||||||| | |||| |||||||||||| |||||||||||||||    
T  1217338 cacacttttattcattaataatatttgagacttttctctcaattctggtggattccggaaacctttattttgataggtttgtcgcttgcaa 1217248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 13882770 - 13882686
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||  |||||||||||    
T  13882770 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 13882686  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 13886243 - 13886159
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||  |||||||||||    
T  13886243 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 13886159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 859240 - 859155
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtcaa 167  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||| ||||  ||| ||||||||    
T  859240 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaatcctacgcttccgtattgcgtcaa 859155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 1217244 - 1217159
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtcaa 167  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||| ||||  ||| ||||||||    
T  1217244 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaatcctacgcttccgtattgcgtcaa 1217159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 13886370 - 13886274
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaaac 109  Q
    |||||||| |||| ||||| ||| |  |||||||| ||||||||||||| |||||||||||| ||||  ||||||||||| |||||||||||||||||    
T  13886370 agagacactttttgattcaataaaatcattcgaga-ttttctctcaattatggtggattctggaaacccttattttgataggtttgtcgcttgcaaac 13886274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 13882868 - 13882774
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||||||| |||| ||||| ||| | |||| |||| ||||||||||||| |||||||||| | ||||  ||||||||||| |||||||||||||||    
T  13882868 agagacactttttgattcaataaaattatttgaga-ttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttgcaa 13882774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 1220524 - 1220446
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtact 160  Q
    |||||| | |||||||||| |||||||||||||| ||| ||| || |||||||| ||| |||||||| |||| ||||||    
T  1220524 tattttcacaagtttgtcgtttgcaaacttgttcatttctatgtaggtttagcgtttgctaaccctacgcttctgtact 1220446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 31577356 - 31577271
Alignment:
Q  21 tttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| ||||| ||| ||||||| ||||||||||||||||| |||||||||  | ||||  ||| ||||||| |||||||||||||||    
T  31577356 ttttcattcaataaaaatattcaagacttttctctcaattctggtggatttcggaaaccctta-tttgataggtttgtcgcttgcaa 31577271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 1220603 - 1220528
Alignment:
Q  25 tattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||||||||| |||||| |||||||||||||||||| ||||||       |||| | |||||||||| |||||||||||||||    
T  1220603 tattcattaacaatattagagacttttctctcaattctggtgg-------aaacctctattttgataggtttgtcgcttgcaa 1220528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 4888758 - 4888715
Alignment:
Q  93 gtttgtcgcttgcaaacttgttcttttttatctaagtttagcgc 136  Q
    ||||||||||||||||||||||||||| |||||| ||| |||||    
T  4888758 gtttgtcgcttgcaaacttgttcttttctatctaggttcagcgc 4888715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 27309699 - 27309636
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttg-ttcttttttatctaagtttagcgcttgataac 144  Q
    |||||| | |||||||||||||||||||||| |||||||  ||||| |||||||||||| ||||    
T  27309699 tattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagcgcttgctaac 27309636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 5678394 - 5678340
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtg 66  Q
    |||||||| |||| ||||| ||| | ||||||||||||||||||||||| |||||    
T  5678394 agagacactttttcattcaataaaattattcgagacttttctctcaattctggtg 5678340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 5703446 - 5703392
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtg 66  Q
    |||||||| |||| ||||| ||| | ||||||||||||||||||||||| |||||    
T  5703446 agagacactttttcattcaataaaattattcgagacttttctctcaattctggtg 5703392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 1786699 - 1786760
Alignment:
Q  93 gtttgtcgcttgcaaacttgttcttttt-tatctaagtttagcgcttgataaccctatgctt 153  Q
    |||||||||||||||||||||| ||||| |||||| ||||||| |||| ||| |||| ||||    
T  1786699 gtttgtcgcttgcaaacttgttatttttctatctaggtttagcacttgctaatcctacgctt 1786760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 29175780 - 29175833
Alignment:
Q  100 gcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgctt 153  Q
    |||||||||||| |||||||  ||||| |||||||||||| |||||||| ||||    
T  29175780 gcttgcaaactttttcttttcaatctaggtttagcgcttgctaaccctacgctt 29175833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 3069053 - 3068963
Alignment:
Q  17 cacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||  ||||||||||| |||||||||||||||    
T  3069053 cacacttttattcattaataatattcgatacttttctctcaattttggtggattccggaaacccttattttgataggtttgtcgcttgcaa 3068963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 3063910 - 3063825
Alignment:
Q  22 ttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||  ||||||||||| |||||||||||||||    
T  3063910 ttttattcattaataatattcgagacttttctctcaattctggttgattccgaaaacccttattttgataggtttgtcgcttgcaa 3063825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 53012932 - 53013025
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgc 105  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||  ||||||||||| |||||||||||||    
T  53012932 agaggcacacttttattcattaataatattcgagacttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttgc 53013025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 43306855 - 43306760
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||||||| |||||||||  | ||||  ||||||||||| |||||||||||||||    
T  43306855 agaggcacacttttattcattaataatattcaagacttttctctcaattctggtggattacggaaacccttattttgataggtttgtcgcttgcaa 43306760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 43304133 - 43304048
Alignment:
Q  22 ttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||  | ||||  ||||||| ||| |||||||||||||||    
T  43304133 ttttattcattaataatattcgagacttttctctcaattctggtggatttcggaaacccttattttaataggtttgtcgcttgcaa 43304048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 5128914 - 5128998
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| ||||||||| || |||||||| |||| ||||||||||||    
T  5128914 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcctgctaaccctacgcttctgtactgcgtca 5128998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 43304044 - 43303959
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtcaa 167  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||  ||||||||||||    
T  43304044 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccttacgcttccgtactgcgtcaa 43303959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 43306756 - 43306672
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | |||||||| |||||||||||||||||||| |||||| |||||||||||| |||||||| ||||  |||||||||||    
T  43306756 tattttcacaagtttgttgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 43306672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 41218710 - 41218769
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattc 71  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  41218710 agagacacacttttattcaataataatattcgagacttttctctcaattctggtggattc 41218769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 3063821 - 3063737
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||||||||||  ||||||| |||||| ||||| |||||| |||||||| ||||| |||||||||||    
T  3063821 tattttcacaagtttgtcgcttgcaaactctttcttttctatctaggtttaacgcttgctaaccctacgctttcgtactgcgtca 3063737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 4580493 - 4580563
Alignment:
Q  36 aatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||||| ||||||||||||| | |||||||||||||||  ||| ||||||| |||||||||||||||    
T  4580493 aatattcgagaattttctctcaattctagtggattctgaaaaccctta-tttgataggtttgtcgcttgcaa 4580563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 5128820 - 5128910
Alignment:
Q  16 acacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| ||||| ||| | ||||||||| ||||||||||||| |||||||||| | ||||  ||||||||||| |||||||||||||||    
T  5128820 acactttttgattcaataaaattattcgaga-ttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttgcaa 5128910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 25857697 - 25857756
Alignment:
Q  12 agagacaca-tttttattcattaataatattcgagacttttctctcaattttggtggatt 70  Q
    ||||||||| |||||||||| |||||||||| |||||||||||||||||| |||||||||    
T  25857697 agagacacactttttattcaataataatatttgagacttttctctcaattgtggtggatt 25857756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 3068940 - 3068875
Alignment:
Q  101 cttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||| || ||||  |||||||||||    
T  3068940 cttgcaaacttgttcttttctatctaggtttagcgcttgctaaccatacgcttccgtactgcgtca 3068875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 40593598 - 40593531
Alignment:
Q  38 tattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||| |||||||||||||||||||||||| ||||||  ||| ||||||| |||||||||||||||    
T  40593598 tattcgaga-ttttctctcaattttggtggattccgaaaaccctta-tttgataggtttgtcgcttgcaa 40593531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 45168465 - 45168338
Alignment:
Q  21 tttttattcattaataatattcgagacttttctctcaattt-tggtggattctgaaaacatttattttg-ataagtttgtcgcttgcaaacttgttcttt 118  Q
    |||||||||| ||| | ||||||||| |||||||||||||| | |||||||||| || | | ||||||  | ||||||||||||||||||||||||  ||    
T  45168465 tttttattcaataaaattattcgaga-ttttctctcaatttcttgtggattctggaaccctatatttttcacaagtttgtcgcttgcaaacttgtttatt 45168367  T
Q  119 tttatctaagtttagcgcttgataaccct 147  Q
    |  ||||| ||||||| |||| |||||||    
T  45168366 tcaatctaggtttagcacttgctaaccct 45168338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 19949933 - 19950003
Alignment:
Q  36 aatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||||| |||||||||||||||||| || |||||||  |||||  ||| |||||||||||||||||||||||    
T  19949933 aatattagagacttttctctcaattctgatggattccaaaaaccctta-tttgataagtttgtcgcttgcaa 19950003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 39913412 - 39913352
Alignment:
Q  12 agagacacattttt-attcattaataatattcgagacttttctctcaattttggtggattc 71  Q
    |||| ||||||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  39913412 agaggcacatttttgattcaataaaaatattcgagacttttctcccaattctggtggattc 39913352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 20398558 - 20398488
Alignment:
Q  36 aatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||||||||||||||| |||||||| |||||||||| ||||||  ||| |||||||   |||||||||||||    
T  20398558 aatattcgagacttttttctcaattctggtggattccgaaaaccctta-tttgatagacttgtcgcttgcaa 20398488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 52708858 - 52708913
Alignment:
Q  91 aagtttgtcgcttgcaaacttgttcttttt-tatctaagtttagcgcttgataacc 145  Q
    |||||| ||||||||||| ||||||||||| |||||| |||||||||||| |||||    
T  52708858 aagtttatcgcttgcaaatttgttctttttctatctaggtttagcgcttgttaacc 52708913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 29340980 - 29340897
Alignment:
Q  21 tttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttg 104  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||| | |||| |||||||||||| ||||||||||||    
T  29340980 tttttattcattaataatattcgagacttttctctcaattctagtggattccggaaacctttattttgataggtttgtcgcttg 29340897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 3536039 - 3536123
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||  |||||||||||    
T  3536039 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 3536123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 3542250 - 3542334
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||| ||||||||||||||| |||||| |||||||||||| |||||||| ||||  |||||||||||    
T  3542250 tattttcacaagtttgtcgcttacaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 3542334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 3535941 - 3536035
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattt-tggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| |  |||  ||||||||||| |||||||||||||||    
T  3535941 agaggcacacttttattcattaataatattcgaga-ttttctctcaatttctggtggattccg-gaacccttattttgataggtttgtcgcttgcaa 3536035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 3542152 - 3542246
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattt-tggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| |  |||  ||||||||||| |||||||||||||||    
T  3542152 agaggcacacttttattcattaataatattcgaga-ttttctctcaatttctggtggattccg-gaacccttattttgataggtttgtcgcttgcaa 3542246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 30049921 - 30050005
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||||||||||||||||||| ||| || |||||||||||| |||||||  ||||  |||||||||||    
T  30049921 tattttcacaagtttgtcgcttgcaaacttgttcttttctatataggtttagcgcttgctaacccttcgcttccgtactgcgtca 30050005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 30052208 - 30052273
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccct 147  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||  |||||||    
T  30052208 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgctttctaaccct 30052273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 29340890 - 29340810
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgc 162  Q
    |||||| | |||||||||||||||||||||||| |||| |||||| ||||||||| || |||||||| ||||  |||||||    
T  29340890 tattttcacaagtttgtcgcttgcaaacttgtttttttctatctaggtttagcgcctgctaaccctacgcttccgtactgc 29340810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 30049827 - 30049917
Alignment:
Q  16 acacatttttattcattaataatattcgagacttttctctcaa-ttttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |  |||  | ||||||||| |||||||||||||||    
T  30049827 acacttttttattcattaataatattcgaga-ttttctctcaatttttggtggattccg-gaaccctaattttgataggtttgtcgcttgcaa 30049917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 30052114 - 30052204
Alignment:
Q  16 acacatttttattcattaataatattcgagacttttctctcaa-ttttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |  |||  | ||||||||| |||||||||||||||    
T  30052114 acacttttttattcattaataatattcgaga-ttttctctcaatttttggtggattccg-gaaccctaattttgataggtttgtcgcttgcaa 30052204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 3565652 - 3565733
Alignment:
Q  21 tttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgctt 103  Q
    |||| ||||| ||| ||||||||||||||||||||||||| ||||||||| || ||||  ||| ||||||| |||| ||||||    
T  3565652 ttttcattcaataaaaatattcgagacttttctctcaattctggtggattttggaaactctta-tttgataggtttatcgctt 3565733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 33615588 - 33615530
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttt-tatctaagtttagcgcttg 139  Q
    |||||| | |||||||||||||||||||||||||||||| |||||| |||| |||||||    
T  33615588 tattttcacaagtttgtcgcttgcaaacttgttctttttctatctaggttttgcgcttg 33615530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 19232241 - 19232286
Alignment:
Q  23 tttattcattaataatattcgagacttttctctcaattttggtgga 68  Q
    |||||||| ||| |||||||||||||||| ||||||||||||||||    
T  19232241 tttattcaataacaatattcgagacttttatctcaattttggtgga 19232286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 29342061 - 29342116
Alignment:
Q  114 tcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtcaata 169  Q
    |||||| |||||| |||||||||||| |||||||| ||||  ||||||||||||||    
T  29342061 tcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcaata 29342116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 11190408 - 11190498
Alignment:
Q  14 agacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||||| |||| ||||| ||| | ||||||||| ||||||||||||| |||||||||| | |||| ||   ||||||| |||||||||||||||    
T  11190408 agacactttttgattcaataaaattattcgaga-ttttctctcaattctggtggattccggaaacctt--atttgataggtttgtcgcttgcaa 11190498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 1127271 - 1127315
Alignment:
Q  94 tttgtcgcttgcaaacttg-ttcttttttatctaagtttagcgct 137  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||    
T  1127271 tttgtcgcttgcaaacttgtttctttttaatctaggtttagcgct 1127315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 22716564 - 22716659
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||  || |||||||| |||||||||||||||    
T  22716564 agaggcacacttttattcattaataatattcgagacttttctctcaattctggtggattccggaaaccctttttttgataggtttgtcgcttgcaa 22716659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 13085274 - 13085180
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||||||| |||||||||| ||| | ||||||||| |||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||||||    
T  13085274 agagacacttttttattcaataaaattattcgaga-ttttctctcaattttggtggattccgaaaacccttattttgataggtttgtcgcttgcaa 13085180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 22691217 - 22691312
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||  |||||| |||| |||||||||||||||    
T  22691217 agaggcacacttttattcattaataatattcaagacttttctctcaattctggtggattccggaaacccttatttcgataggtttgtcgcttgcaa 22691312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 22988653 - 22988558
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||  || ||| |||| |||||||||||||||    
T  22988653 agaggcacacttttattcattaataatattcgagacttttctctcaattctggtggattccggaaacccttttttcgataggtttgtcgcttgcaa 22988558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 6659414 - 6659351
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataacc 145  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||  ||||||||||| |||||    
T  6659414 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctagatttagcgcttgctaacc 6659351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 6659503 - 6659418
Alignment:
Q  21 tttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| ||||| ||| | ||||||||| ||||||||||||| |||||||||| | ||||  ||||||||||| |||||||||||||||    
T  6659503 ttttgattcactaaaactattcgaga-ttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttgcaa 6659418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 13086308 - 13086227
Alignment:
Q  21 tttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgctt 103  Q
    |||| ||||| ||| | ||||||||| ||||||||||||| |  ||||||||||||||  ||||||||||| |||||||||||    
T  13086308 ttttaattcaataaaattattcgaga-ttttctctcaattctaatggattctgaaaactcttattttgataggtttgtcgctt 13086227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 19935492 - 19935577
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtcaat 168  Q
    |||||| |||||||||||||||||||| || || |||| ||||| ||||||||||| | | | |||| |||| ||||||||||||||    
T  19935492 tattttcataagtttgtcgcttgcaaatttatttttttctatctgagtttagcgctggct-agcctacgcttctgtactgcgtcaat 19935577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 4053062 - 4053111
Alignment:
Q  21 tttttattcattaataatattcgagacttttctctcaattttggtggatt 70  Q
    |||| ||||| ||| ||||||||||||||||||||||||| |||||||||    
T  4053062 ttttcattcaataaaaatattcgagacttttctctcaattatggtggatt 4053111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 7723746 - 7723665
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtc 165  Q
    |||||| | |||||||| ||||||||||||||||||||  |||| ||||||||||||| | | |||| |||| |||||||||||    
T  7723746 tattttcacaagtttgtagcttgcaaacttgttcttttcaatct-agtttagcgcttgct-agcctacgcttctgtactgcgtc 7723665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 9596857 - 9596942
Alignment:
Q  21 tttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| ||||| ||| |||||| |||||||||||||||||| ||||||||| || ||||  ||| ||||||| |||| ||| ||||||    
T  9596857 ttttcattcaataagaatatttgagacttttctctcaattctggtggattatggaaaccctta-tttgataggtttatcgtttgcaa 9596942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 21433647 - 21433594
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttt-tatctaagtttagc 134  Q
    |||||| ||||||||||||||||| || ||||||||||| |||||| |||||||    
T  21433647 tattttcataagtttgtcgcttgcgaatttgttctttttctatctaggtttagc 21433594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 24667609 - 24667637
Alignment:
Q  27 ttcattaataatattcgagacttttctct 55  Q
    |||||||||||||||||||||||||||||    
T  24667609 ttcattaataatattcgagacttttctct 24667637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 34949162 - 34949126
Alignment:
Q  22 ttttattcattaataatattcgagacttttctctcaa 58  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  34949162 ttttattcaataaaaatattcgagacttttctctcaa 34949126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 13444171 - 13444076
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||||||||||||| |||||||||| |||||||||||||||||| |||||||||  | ||||  ||||||||||| |||||||||||||||    
T  13444171 agaggcacatttttattcagtaataatattagagacttttctctcaattctggtggattacggaaacccttattttgatatgtttgtcgcttgcaa 13444076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 13444072 - 13443988
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtca 166  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||  | |||||||||    
T  13444072 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagtgcttgttaaccctatgcttccgaactgcgtca 13443988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 50857528 - 50857443
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtcaa 167  Q
    |||||| | ||||||||||||| ||||||| ||||||| |||||| |||||||||||| |||||||| ||||  ||||||||||||    
T  50857528 tattttcacaagtttgtcgcttacaaacttattcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcaa 50857443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 13441782 - 13441687
Alignment:
Q  12 agagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| |||||||||||||||||||| |||||||||||||||||| || ||||||| | |||   ||||||| ||| |||| ||||||||||    
T  13441782 agaggcacacttttattcattaataatattagagacttttctctcaattctgatggattccggaaatccttattttaataggtttttcgcttgcaa 13441687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 8931225 - 8931310
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtcaa 167  Q
    |||||| | |||||| ||||||||||||||||| ||||  ||||| |||||||||||| |||||||| ||||  ||||||||||||    
T  8931225 tattttcacaagtttatcgcttgcaaacttgtttttttcaatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcaa 8931310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 50857600 - 50857532
Alignment:
Q  38 tattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||| ||||||||||||| |||||||||| | ||||  ||||||||||| |||||||||||||||    
T  50857600 tattcgaga-ttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttgcaa 50857532  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 12033724 - 12033639
Alignment:
Q  21 tttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||||||| | ||| ||||||||||||||||||||||||| |  |||||| || ||||  | | |||||||||||||||||||||||    
T  12033724 tttttatttaataaaaatattcgagacttttctctcaattctaatggattatgtaaaccctca-tttgataagtttgtcgcttgcaa 12033639  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 13441673 - 13441627
Alignment:
Q  99 cgcttgcaaacttgttcttttttatctaagtttagcgcttgataacc 145  Q
    |||||||||| |||||||||| ||||||||||||||||||| |||||    
T  13441673 cgcttgcaaaattgttcttttctatctaagtttagcgcttgctaacc 13441627  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 40804591 - 40804660
Alignment:
Q  37 atattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||||||||||||||||||||||| ||||||||| || ||||   || ||||||| |||||||||||||||    
T  40804591 atattcgagacttttctctcaattctggtggattttggaaacccgta-tttgataggtttgtcgcttgcaa 40804660  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 8931143 - 8931221
Alignment:
Q  28 tcattaataatattcgagacttttctctcaattt-tggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| |  |||  |||| |||||| |||||||||||||||    
T  8931143 tcattaataatattcgaga-ttttctctcaatttctggtggattccg-gaacccttatattgataggtttgtcgcttgcaa 8931221  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 120
Target Start/End: Original strand, 10927206 - 10927235
Alignment:
Q  91 aagtttgtcgcttgcaaacttgttcttttt 120  Q
    ||||||||||||||||||||||||||||||    
T  10927206 aagtttgtcgcttgcaaacttgttcttttt 10927235  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 12486381 - 12486314
Alignment:
Q  38 tattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||| |||||||||||||||||||||||| ||||||  ||| ||| ||| |||||| ||||||||    
T  12486381 tattcgaga-ttttctctcaattttggtggattccgaaaaccctta-tttaataggtttgttgcttgcaa 12486314  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 8965831 - 8965803
Alignment:
Q  89 ataagtttgtcgcttgcaaacttgttctt 117  Q
    |||||||||||||||||||||||||||||    
T  8965831 ataagtttgtcgcttgcaaacttgttctt 8965803  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 43681478 - 43681525
Alignment:
Q  94 tttgtcgcttgcaaacttgttctttttt--atctaagtttagcgcttg 139  Q
    ||||||||||||||||||||| ||||||  ||||| ||||||||||||    
T  43681478 tttgtcgcttgcaaacttgtttttttttcaatctaggtttagcgcttg 43681525  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 40778870 - 40778785
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtcaa 167  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||  ||||  ||||||||||||    
T  40778870 tatttttacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgttaaccctgcgcttccgtactgcgtcaa 40778785  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 21849049 - 21848966
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttgataaccctatgcttttgtactgcgtc 165  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| |||| ||||||| |||||||| ||||  ||||||||||    
T  21849049 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttggcgcttgctaaccctacgcttccgtactgcgtc 21848966  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 19677289 - 19677219
Alignment:
Q  36 aatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    ||||||||||||||||||||||||| |||||||||| ||||||  ||| ||||| | |||||||||||||||    
T  19677289 aatattcgagacttttctctcaattctggtggattccgaaaaccctta-tttgaaaggtttgtcgcttgcaa 19677219  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 40778964 - 40778874
Alignment:
Q  16 acacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtcgcttgcaa 107  Q
    |||| |||| ||||| ||| | ||||||||| ||||||||||||| ||||||||||   ||||  ||||||||||| |||||||||||||||    
T  40778964 acactttttgattcaataaaattattcgaga-ttttctctcaattctggtggattccagaaacccttattttgataggtttgtcgcttgcaa 40778874  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 19497388 - 19497349
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttctttttt 121  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  19497388 tattttcacaagtttgtcgcttgcaaacttgttctttttt 19497349  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 22440870 - 22440920
Alignment:
Q  89 ataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttg 139  Q
    ||||||||||||||||| ||| ||||||||| |||||| ||||||| ||||    
T  22440870 ataagtttgtcgcttgcgaacatgttcttttctatctaggtttagcacttg 22440920  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 492581 - 492630
Alignment:
Q  91 aagtttgtcgcttgcaaacttg-ttcttttttatctaagtttagcgcttg 139  Q
    |||||||||||||||||||||| |||||||  |||||| |||||||||||    
T  492581 aagtttgtcgcttgcaaacttgtttcttttcaatctaaatttagcgcttg 492630  T

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Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 37716 - 37772
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttcttttttatctaagtttagcgctt 138  Q
    |||||| |||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  37716 tattttcataagtttgtcgcttgcaaacttgttcttttcaatctaggtttagcgctt 37772  T

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Target: scaffold0054; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 49327 - 49362
Alignment:
Q  82 tattttgataagtttgtcgcttgcaaacttgttctt 117  Q
    |||||| |||||||||||||||||||||||||||||    
T  49327 tattttcataagtttgtcgcttgcaaacttgttctt 49362  T

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Target: scaffold0240 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 16063 - 16109
Alignment:
Q  93 gtttgtcgcttgcaaacttgttcttttttatctaagtttagcgcttg 139  Q
    ||||||| ||||||||||||||||||| |||||| ||||||| ||||    
T  16063 gtttgtcacttgcaaacttgttcttttctatctaggtttagcacttg 16109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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