View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_high_35 (Length: 277)
Name: NF0796_high_35
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_high_35 |
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| [»] scaffold0060 (2 HSPs) |
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| [»] scaffold1769 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 69369 - 69161
Alignment:
| Q |
16 |
attaacatgataagttgaaattccactttccggaaaagtttatcctctatcaagtctattctttcaactatcttcaattctagagtgcctaaaatgctaa |
115 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
69369 |
attaacatgataagttgaaattccactttccagaaaagtttatcctctatcaagtctattctttcaactatcttgaattctagagtgcctaacatgctaa |
69270 |
T |
|
| Q |
116 |
atttcaaaatttgaagaccaactcataccttccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaacagtgtatcat |
215 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69269 |
atttcaaaatctcaagaccaactcataccttccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaacagtgtatcat |
69170 |
T |
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| Q |
216 |
agaacactg |
224 |
Q |
| |
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||||||||| |
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| T |
69169 |
agaacactg |
69161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 65433 - 65306
Alignment:
| Q |
16 |
attaacatgataagttgaaattccactttccggaaaagtttat------cctctatcaagtctattctttcaactatcttcaattctagagtgcctaaaa |
109 |
Q |
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||||||||||||||||||||||||| ||| | ||||||||| |||||||||||| ||||||||||||| |||| |||| |||||||||||| | |
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| T |
65433 |
attaacatgataagttgaaattccagtttttg--aaagtttattcttaacctctatcaagtttattctttcaactgtcttaaattgtagagtgcctaaca |
65336 |
T |
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| Q |
110 |
tgctaaatttcaaaatttgaagaccaactc |
139 |
Q |
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||||| |||||||||| | || |||||||| |
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| T |
65335 |
tgctatatttcaaaatctcaaaaccaactc |
65306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 8442584 - 8442818
Alignment:
| Q |
16 |
attaacatgataagttgaaattccactttccggaaaagtttatcctctatcaagtctattctttcaactatcttcaattctagagtgcctaaaatgctaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
8442584 |
attaacatgataagttgaaattccactttccggaaaagtttatcctctatcaagtctattctttcaactatcttgaattctagagtgcctaacatgctaa |
8442683 |
T |
|
| Q |
116 |
atttcaaaatttgaagaccaactcataccttccaatgctgctaaatttagca----------tcactataaccggtatttgacatcattttgtactaaac |
205 |
Q |
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| T |
8442684 |
atttcaaaatctgaagaccaactcataccttccaatgctgctaaatttagcatcactaatattcactataaccggtatttgacatcattttgtactaaac |
8442783 |
T |
|
| Q |
206 |
agtgtatcatagaacactggatatttcttcaaatt |
240 |
Q |
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| T |
8442784 |
agtgtatcatagaacactggatatttcttcaaatt |
8442818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 8348555 - 8348656
Alignment:
| Q |
147 |
ccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactggatatttcttcaaattctccta |
246 |
Q |
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||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||||| |||||||||| |
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| T |
8348555 |
ccaatgctgctaaatttagcatcgctgtagccggtatttgacatcattttgtactaatcagtgtatcacagaccactggcaatttcttcgaattctccta |
8348654 |
T |
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| Q |
247 |
tg |
248 |
Q |
| |
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|| |
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| T |
8348655 |
tg |
8348656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 249
Target Start/End: Original strand, 8409801 - 8409905
Alignment:
| Q |
144 |
cttccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactggatatttcttcaaattctc |
243 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||| | || ||| ||||||||||| |||||| ||| |||||| |||||||||||||||| |
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| T |
8409801 |
cttccaatgctgctaaatttagcatcgctatagccggtatttggcttccttt-gtactaaacagcgtatcacagaccactggcaatttcttcaaattctc |
8409899 |
T |
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| Q |
244 |
ctatgt |
249 |
Q |
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|||||| |
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| T |
8409900 |
ctatgt |
8409905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 7915374 - 7915312
Alignment:
| Q |
144 |
cttccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaaca |
206 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||||| |
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| T |
7915374 |
cttccaatgctgctaaatttagcatcgctatagccggtatttggcatgattttgtactaaaca |
7915312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 8364424 - 8364505
Alignment:
| Q |
59 |
cctctatcaagtctattctttcaactatcttcaattctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcata |
142 |
Q |
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|||||||||||| ||||||||||||| || |||| ||||||||| || ||||||||||||||||| | |||||||||||||| |
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| T |
8364424 |
cctctatcaagtgtattctttcaactgtcg--aattgtagagtgccgaacatgctaaatttcaaaatctcaagaccaactcata |
8364505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 7915566 - 7915473
Alignment:
| Q |
59 |
cctctatcaagtctattctttcaactatcttcaattcta--gagtgcctaaaatgctaaatttcaaaatttgaagaccaactcataccttccaa |
150 |
Q |
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|||||||||||| ||| ||||||| | |||| |||| || |||||| || ||||||||||||||||| | |||||||||||||||||||||| |
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| T |
7915566 |
cctctatcaagtgtatcctttcaattgtcttgaattgtatagagtgcagaacatgctaaatttcaaaatctcaagaccaactcataccttccaa |
7915473 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 8348411 - 8348494
Alignment:
| Q |
59 |
cctctatcaagtctattctttcaactatcttcaattctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcata |
142 |
Q |
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||||| |||||| ||||||||||||| ||| |||| |||||| || || |||||||| |||||||| | |||||||||||||| |
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| T |
8348411 |
cctctttcaagtgtattctttcaactgtctcgaattgtagagttccgaacatgctaaacttcaaaatctcaagaccaactcata |
8348494 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold1769
Description:
Target: scaffold1769; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 448 - 230
Alignment:
| Q |
16 |
attaacatgataagttgaaattccactttccggaaaagtttatcctctatcaagtctattctttcaactatcttcaattctagagtgcctaaaatgctaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
448 |
attaacatgataagttgaaattccactttcctgaaaagtttatcctctatcaagtctattctttcaactatcttgaattctagagtgcctaacatgctaa |
349 |
T |
|
| Q |
116 |
atttcaaaatttgaagaccaactcataccttccaatgctgctaaatttagcatc----------actataaccggtatttgacatcattttgtactaaac |
205 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
348 |
atttcaaaatctcaagaccaactcataccttccaatgctgctaaatttagcatcactaatattcactataaccggtatttgacatcattttgtactaaac |
249 |
T |
|
| Q |
206 |
agtgtatcatagaacactg |
224 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
248 |
agtgtatcatagaacactg |
230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 44460390 - 44460350
Alignment:
| Q |
181 |
tatttgacatcattttgtactaaacagtgtatcatagaaca |
221 |
Q |
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||||||||| |||||||||||||| |||||||||| ||||| |
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| T |
44460390 |
tatttgacaacattttgtactaaatagtgtatcatggaaca |
44460350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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