View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0796_high_39 (Length: 259)
Name: NF0796_high_39
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_high_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 41581781 - 41582021
Alignment:
| Q |
1 |
ctagaaactaagctatcaaattagaatacgataatacataactgtcaatctgtcatagatgatgttagtgttcattctagctttgctaagtgtatgt--- |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41581781 |
ctagaaactaagctatcaaattagaatacgataatacataactgtcaatctgtcatagatgatgttagtgttcattctagctttgctaagtgtatgttta |
41581880 |
T |
|
| Q |
98 |
-ttgctctgcatatccttgatgcctctaaaattccatgtaagttatattatttgtatcttacattcatccatatgtctcttaca-------cgccagggt |
189 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41581881 |
attgctctgcatatacttgatgcctctaaaattccatgtaagttatattatttgtatcttacattcatccatatgtctcttacacgccactcgccagggt |
41581980 |
T |
|
| Q |
190 |
agataatgatagattagaatccaatcaatccacgcaccttc |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41581981 |
agataatgatagattagaatccaatcaatccacgcaccttc |
41582021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6111 times since January 2019
Visitors: 5762