View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0796_high_4 (Length: 790)
Name: NF0796_high_4
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 31 - 476
Target Start/End: Original strand, 13113349 - 13113828
Alignment:
| Q |
31 |
aaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacatttgtggtccagcctgcattgaaacatggaaactta |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13113349 |
aaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacattcgtggtccagcctgcattgaaacatggaaactta |
13113448 |
T |
|
| Q |
131 |
cacactataatgtgtcata----------------------aaatttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatggtgat |
208 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13113449 |
cacactataatatgtcataaaaaaagtcttatcaagcaataaaatttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatggcgat |
13113548 |
T |
|
| Q |
209 |
tcgggctggaaaattccgttgttaatccatctttcaggacaaaattcatcggcgtcatccccccaaatggaagacattcgacccatagcataggccaagt |
308 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13113549 |
tcgggttggaaaattccgtctgtaatccatctttcaggacgaaattcatcggcgtcttccccccaaatggaagacattcgacccatagcataggccaagt |
13113648 |
T |
|
| Q |
309 |
agtacactccatcgcccttttccactttgtgtccatcgggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataacaagaca |
408 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13113649 |
aatacactccatcgcccttttccagtttgtgtccatcgggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataacaagaca |
13113748 |
T |
|
| Q |
409 |
------------caaaatctaacatataatgttgtttataggtgcattttaacatggaaatatttagattacagtcacat |
476 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13113749 |
caaaaatatcatcaaaatctaacatgtaatgttgtttataggtgcattttaacatggaaatatttagattacagtcacat |
13113828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 475 - 781
Target Start/End: Original strand, 13113971 - 13114277
Alignment:
| Q |
475 |
ataaaaataattcaagatggtttcgaagaaattggtagaaggtacatacgatagggagtacagggtacaatctcaatgtctctgcgagtgttgcatgaag |
574 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13113971 |
ataaaaataattcaagatggttttgaagaaattggtagaaggtacatacaacagggagtacagggtacaatctcaatgtctctgtgagtgttgcatgaag |
13114070 |
T |
|
| Q |
575 |
ataatgcattttatcaagtattaagtctgttaaattggcaacaaactcatctatgctgttgagttcactttcatggctacaagtaacatctcttatttct |
674 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13114071 |
ataatgcattttatcgagtattaagtctgttaaattggcaacaaactcatctatgctgttgagttcactttcatggctacaagtaacatctcttatttct |
13114170 |
T |
|
| Q |
675 |
tgcacaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttga |
774 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13114171 |
tgcacaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttga |
13114270 |
T |
|
| Q |
775 |
gaattat |
781 |
Q |
| |
|
||||||| |
|
|
| T |
13114271 |
gaattat |
13114277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 147 - 476
Target Start/End: Complemental strand, 18671135 - 18670794
Alignment:
| Q |
147 |
ataaaatttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatggtgattcgggctggaaaattccgttgttaatccatctttcagg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18671135 |
ataaaatttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatggtgattcaggctggaaaattccgttgttaatccatctttcagg |
18671036 |
T |
|
| Q |
247 |
acaaaattcatcggcgtcatccccccaaatggaagacattcgacccatagcataggccaagtagtacactccatcgcccttttccactttgtgtccatcg |
346 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18671035 |
acaaaattcatcgacgtcttccccccagatggaagacattcgacccatagcataggccaagtagtacactccatcgcccttttccactttgtgtccatcg |
18670936 |
T |
|
| Q |
347 |
ggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataacaagacac------------aaaatctaacatataatgttgttta |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
18670935 |
ggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataacaagacacaaaaatatcatcaaaatctaacatgtaatgttgttta |
18670836 |
T |
|
| Q |
435 |
taggtgcattttaacatggaaatatttagattacagtcacat |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18670835 |
taggtgcattttaacatggaaatatttagattacagtcacat |
18670794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 31 - 400
Target Start/End: Original strand, 13102508 - 13102898
Alignment:
| Q |
31 |
aaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacatttgtggtccagcctgcattgaaacatggaaactta |
130 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13102508 |
aaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacatacgtggtccagcctgcattgaaacatggaaactta |
13102607 |
T |
|
| Q |
131 |
cacactataatgtgtcataaa---------------------atttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatggtgatt |
209 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13102608 |
cacactataatgtgtcataaaagagtcttatcaagcattaaaatttgaaggaacataaatgtacaaattacatggaatgctacgaatttgaatggtgatt |
13102707 |
T |
|
| Q |
210 |
cgggctggaaaattccgttgttaatccatctttcaggacaaaattcatcggcgtcatccccccaaatggaagacattcgacccatagcataggccaagta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13102708 |
cgggctggaaaattccgttgttaatccatctttctggacgaaattcattggcgtcttccccccatatggaagacattcgacccatagcataggccaagta |
13102807 |
T |
|
| Q |
310 |
gtacactccatcgcccttttccactttgtgtccatcgggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcata |
400 |
Q |
| |
|
|| |||||| || |||||||||| |||||||||||| ||||||| ||| || ||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
13102808 |
gttcactccgtctcccttttccagtttgtgtccatcaggaagaatatcaggtgcatctgcagttcttccatccttgaaaaatgatatcata |
13102898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 477 - 781
Target Start/End: Original strand, 13102999 - 13103303
Alignment:
| Q |
477 |
aaaaataattcaagatggtttcgaagaaattggtagaaggtacatacgatagggagtacagggtacaatctcaatgtctctgcgagtgttgcatgaagat |
576 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
13102999 |
aaaaataacttaagatggtttcgaagaaattggtagaaggtacatacaataggaacaacaggatacaatctcaatgtctctgtgagtgctgcatgaagat |
13103098 |
T |
|
| Q |
577 |
aatgcattttatcaagtattaagtctgttaaattggcaacaaactcatctatgctgttgagttcactttcatggctacaagtaacatctcttatttcttg |
676 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| || |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13103099 |
aatgcattttatcaagtattacatccgttaaattgccagcaaattcatctatgttgttgagttcactttcatggctacaagtaacatcttttatttcttg |
13103198 |
T |
|
| Q |
677 |
cacaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttgaga |
776 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
13103199 |
cacaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtgtttgcagtggtatctttgccagctatcataaagttgaga |
13103298 |
T |
|
| Q |
777 |
attat |
781 |
Q |
| |
|
||||| |
|
|
| T |
13103299 |
attat |
13103303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 478 - 781
Target Start/End: Original strand, 13097848 - 13098149
Alignment:
| Q |
478 |
aaaataattcaagatggtttcgaagaaattggtagaaggtacatacgatagggagtacagggtacaatctcaatgtctctgcgagtgttgcatgaagata |
577 |
Q |
| |
|
||||||| ||||||||||| ||| |||| |||||||||||||| | ||||| |||||||||||||| || ||||||| ||||| |||||||||||| |
|
|
| T |
13097848 |
aaaataactcaagatggttgagaa--aatttatagaaggtacataccacagggacaacagggtacaatcttaaggtctctgtgagtgctgcatgaagata |
13097945 |
T |
|
| Q |
578 |
atgcattttatcaagtattaagtctgttaaattggcaacaaactcatctatgctgttgagttcactttcatggctacaagtaacatctcttatttcttgc |
677 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| | |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13097946 |
atgcattttatcaagtattgagtctgttagattggtagcaaactcatctatgttgctgagttcactttcatggaaacaagtaacatctcttatttcttgc |
13098045 |
T |
|
| Q |
678 |
acaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttgagaa |
777 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13098046 |
acaatcttgtcctccacaatagggttcttgcataacatgtagaagaaccatgaaagagtatttgcagtggtgtctttgccagctatcataaagttgagaa |
13098145 |
T |
|
| Q |
778 |
ttat |
781 |
Q |
| |
|
|||| |
|
|
| T |
13098146 |
ttat |
13098149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 149 - 400
Target Start/End: Original strand, 13095317 - 13095568
Alignment:
| Q |
149 |
aaaatttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatggtgattcgggctggaaaattccgttgttaatccatctttcaggac |
248 |
Q |
| |
|
||||||| |||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
13095317 |
aaaatttaaaggaaaataaatgtacaaattacatgaaatgctacaaatttgaatggtgattcgggttggaaaattccgtctgtaatccatctttcaggac |
13095416 |
T |
|
| Q |
249 |
aaaattcatcggcgtcatccccccaaatggaagacattcgacccatagcataggccaagtagtacactccatcgcccttttccactttgtgtccatcggg |
348 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| | || ||||||| || |||||| ||||| || |
|
|
| T |
13095417 |
gaaattcttcggcgtcttccccccaaatggaagacattcgacccatagcataggccatgtagttcactgcgtctcccttttgcagtttgtggccatcagg |
13095516 |
T |
|
| Q |
349 |
aagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcata |
400 |
Q |
| |
|
||||| ||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13095517 |
aagaatatcaggtgcatccgcagttcttccatccttgaaaaatagtatcata |
13095568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 18671275 - 18671154
Alignment:
| Q |
31 |
aaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacatttgtggtccagcctgcattgaaacatggaaactta |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18671275 |
aaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacattcgtggtccagcctgcattgaaacatggaaactta |
18671176 |
T |
|
| Q |
131 |
cacactataatgtgtcataaaa |
152 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
18671175 |
cacactataatgtgtcataaaa |
18671154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 13095166 - 13095266
Alignment:
| Q |
31 |
aaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacatttgtggtccagcctgcattgaaacatggaaactta |
130 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || |||||| | ||||||| |
|
|
| T |
13095166 |
aaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacatacgaggtccagcctacaaagaaacacgaaaactta |
13095265 |
T |
|
| Q |
131 |
c |
131 |
Q |
| |
|
| |
|
|
| T |
13095266 |
c |
13095266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 695 - 781
Target Start/End: Original strand, 13078092 - 13078178
Alignment:
| Q |
695 |
aagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttgagaattat |
781 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| | |||||| ||| | |||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
13078092 |
aagagggttcttgcaaagcatgtagaagaaccatgacaaagtattggcacttgtgtcttttccagcaatcataaagttcagaattat |
13078178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 13077683 - 13077732
Alignment:
| Q |
263 |
tcatccccccaaatggaagacattcgacccatagcataggccaagtagta |
312 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
13077683 |
tcatccccccaaatgtaaggcattcttcccatagcataggacaagtagta |
13077732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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