View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796_high_41 (Length: 251)

Name: NF0796_high_41
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796_high_41
NF0796_high_41
[»] chr1 (2 HSPs)
chr1 (52-240)||(16168766-16168945)
chr1 (3-81)||(28201591-28201669)
[»] chr5 (5 HSPs)
chr5 (3-174)||(7823039-7823212)
chr5 (3-81)||(35074069-35074147)
chr5 (3-77)||(29681591-29681665)
chr5 (68-240)||(25214429-25214604)
chr5 (68-240)||(25278579-25278754)
[»] chr2 (5 HSPs)
chr2 (3-95)||(19912413-19912506)
chr2 (1-73)||(21289555-21289627)
chr2 (3-63)||(45276507-45276567)
chr2 (200-240)||(17319631-17319671)
chr2 (1-73)||(21294853-21294925)
[»] chr4 (4 HSPs)
chr4 (1-83)||(56341732-56341814)
chr4 (36-79)||(2928815-2928858)
chr4 (11-78)||(51700233-51700300)
chr4 (164-240)||(42342762-42342839)
[»] scaffold0505 (1 HSPs)
scaffold0505 (188-240)||(9223-9275)
[»] chr8 (1 HSPs)
chr8 (134-240)||(28350646-28350753)
[»] chr3 (2 HSPs)
chr3 (140-240)||(27547211-27547312)
chr3 (187-240)||(27543797-27543850)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 52 - 240
Target Start/End: Complemental strand, 16168945 - 16168766
Alignment:
Q  52 aaaagatgagagtttttgtattattctcttcaatgtgtatatttatatcggaacatgagtcatatttatataagcaagtaatcaagtgaatgatcacatt 151  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||| ||||||||||||||||||||||||||    
T  16168945 aaaatatgagagtttttgtattattctcttcaatgtgtatatttatat---------agtcatatttatataaacaagtaatcaagtgaatgatcacatt 16168855  T
Q  152 cggtcaaagatcactaacaatttttcactaactagagttataagaatttggaaaatcaagaatagacattcaccaacattattattcat 240  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16168854 cggtcaaagaccactaacaatttttcactaactagagttataagaatttggaaaatcaagaatagacattcaccaacattattattcat 16168766  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 28201591 - 28201669
Alignment:
Q  3 aaataaactaaatgacaagatcaaaaataaggaagattatcaaagatagaaaagatgagagtttttgtattattctctt 81  Q
    ||||||||||||||||||||| |||||||  |||||| |||||||||||| || ||||| ||||||||| |||||||||    
T  28201591 aaataaactaaatgacaagataaaaaatagagaagatgatcaaagatagagaatatgagtgtttttgtactattctctt 28201669  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 7823039 - 7823212
Alignment:
Q  3 aaataaactaaatgacaagatcaaaaataaggaagattatcaaagatagaaaagatgagagtttttgtattattctcttca-atgtgtatatttatatcg 101  Q
    |||||||||||||||||| ||||||  ||  |||||| |||||||||||| |||||||||  ||||||||||||||||||| | |||| | |||| |||     
T  7823039 aaataaactaaatgacaaaatcaaatgtagagaagataatcaaagatagagaagatgagaacttttgtattattctcttcacaagtgtttctttacatca 7823138  T
Q  102 gaacatgagtcatatttata-taagcaagtaatcaagtgaatgatcacattcggtcaaagatcactaacaattt 174  Q
     ||||| |||| ||||||||  |  ||| ||| |||||||||| |||||| |  ||||||| ||||||||||||    
T  7823139 aaacataagtcctatttataggacacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattt 7823212  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 35074069 - 35074147
Alignment:
Q  3 aaataaactaaatgacaagatcaaaaataaggaagattatcaaagatagaaaagatgagagtttttgtattattctctt 81  Q
    ||||||| |||||||||||| ||||||||| |||||| |||||||||||| |||||  ||| |||||||||||||||||    
T  35074069 aaataaaataaatgacaagagcaaaaataaagaagatgatcaaagatagagaagataggagattttgtattattctctt 35074147  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 29681591 - 29681665
Alignment:
Q  3 aaataaactaaatgacaagatcaaaaataaggaagattatcaaagatagaaaagatgagagtttttgtattattc 77  Q
    ||||||||||||||||||||| |||||||  |||||  | |||||||||| || |||| ||||||||||||||||    
T  29681591 aaataaactaaatgacaagatgaaaaatagagaagaagaccaaagatagagaaaatgaaagtttttgtattattc 29681665  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 25214429 - 25214604
Alignment:
Q  68 tgtattattctcttca-atgtgtatatttatatcggaacatgagtcatatttatataag-caagtaatcaagtgaatgatcacattcggtcaaagatcac 165  Q
    |||||||||||||||  | |||||| |||| |||  |||||||||| ||||||||  |  ||| ||| |||||||||| |||||| |  ||||||| |||    
T  25214429 tgtattattctcttcccaagtgtatctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcac 25214528  T
Q  166 taacaatt--tttcactaactagagttataagaatttggaaaatcaagaatagacattcaccaacattattattcat 240  Q
    ||||||||  || ||||||   |||||||| ||| |||||| ||||||||| ||||| ||| ||| |||||||||||    
T  25214529 taacaattcattccactaatgggagttata-gaacttggaagatcaagaatggacatccactaactttattattcat 25214604  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 25278579 - 25278754
Alignment:
Q  68 tgtattattctcttca-atgtgtatatttatatcggaacatgagtcatatttatataag-caagtaatcaagtgaatgatcacattcggtcaaagatcac 165  Q
    |||||||||||||||  | |||||| |||| |||  |||||||||| ||||||||  |  ||| ||| |||||||||| |||||| |  ||||||| |||    
T  25278579 tgtattattctcttcccaagtgtatctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcac 25278678  T
Q  166 taacaatt--tttcactaactagagttataagaatttggaaaatcaagaatagacattcaccaacattattattcat 240  Q
    ||||||||  || ||||||   |||||||| ||| |||||| ||||||||| ||||| ||| ||| |||||||||||    
T  25278679 taacaattcattccactaatgggagttata-gaacttggaagatcaagaatggacatccactaactttattattcat 25278754  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 19912506 - 19912413
Alignment:
Q  3 aaataaactaaatgacaagatcaaaaataaggaagattatcaaagatagaaaagatgagagtttttgtattattctcttca-atgtgtatattt 95  Q
    |||||||||||||||||| ||||||  ||  |||||| |||||||||||| |||||||||| ||||||||||||||||||| | ||||||||||    
T  19912506 aaataaactaaatgacaaaatcaaatgtagagaagataatcaaagatagagaagatgagagcttttgtattattctcttcacaagtgtatattt 19912413  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21289555 - 21289627
Alignment:
Q  1 taaaataaactaaatgacaagatcaaaaataaggaagattatcaaagatagaaaagatgagagtttttgtatt 73  Q
    |||||||||||||||||||| ||||||  ||  |||||| |||||||||||| || ||||||| |||||||||    
T  21289555 taaaataaactaaatgacaaaatcaaatgtagagaagataatcaaagatagagaacatgagagcttttgtatt 21289627  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 45276567 - 45276507
Alignment:
Q  3 aaataaactaaatgacaagatcaaaaataaggaagattatcaaagatagaaaagatgagag 63  Q
    ||||||||||||||||||||| |||||||  |||||| || ||||||||| ||||||||||    
T  45276567 aaataaactaaatgacaagataaaaaatagtgaagatgataaaagatagagaagatgagag 45276507  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 17319631 - 17319671
Alignment:
Q  200 tggaaaatcaagaatagacattcaccaacattattattcat 240  Q
    ||||| ||||||||| ||||| |||||||||||||||||||    
T  17319631 tggaagatcaagaatggacatccaccaacattattattcat 17319671  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21294853 - 21294925
Alignment:
Q  1 taaaataaactaaatgacaagatcaaaaataaggaagattatcaaagatagaaaagatgagagtttttgtatt 73  Q
    ||||||||||||||| |||| ||||||  ||  |||||| |||||||||||| || || |||| |||||||||    
T  21294853 taaaataaactaaattacaaaatcaaatgtagagaagataatcaaagatagagaacattagagcttttgtatt 21294925  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 56341732 - 56341814
Alignment:
Q  1 taaaataaactaaatgacaagatcaaaaataaggaagattatcaaagatagaaaagatgagagtttttgtattattctcttca 83  Q
    ||||||||| ||||||||||||| |||||||  |||||| ||||||||   | ||||||||||||||||||||||||||||||    
T  56341732 taaaataaattaaatgacaagataaaaaatagagaagatgatcaaagaccaagaagatgagagtttttgtattattctcttca 56341814  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 2928815 - 2928858
Alignment:
Q  36 agattatcaaagatagaaaagatgagagtttttgtattattctc 79  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||    
T  2928815 agataatcaaagatagagaagatgagagtttttatattattctc 2928858  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 51700233 - 51700300
Alignment:
Q  11 taaatgacaagatcaaaaataaggaagattatcaaagatagaaaagatgagagtttttgtattattct 78  Q
    |||||||||||||||||  ||  |||||| |||||||||||| |||||||  | ||||||||||||||    
T  51700233 taaatgacaagatcaaatgtagagaagataatcaaagatagagaagatgatggcttttgtattattct 51700300  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 42342839 - 42342762
Alignment:
Q  164 actaacaattt-ttcactaactagagttataagaatttggaaaatcaagaatagacattcaccaacattattattcat 240  Q
    ||||||||||| |||||||| || |||||||||||| || ||||||||   ||||||| ||||||| |||| ||||||    
T  42342839 actaacaatttattcactaattaaagttataagaatgtgaaaaatcaaaggtagacatccaccaactttatcattcat 42342762  T

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Target: scaffold0505 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 9275 - 9223
Alignment:
Q  188 gttataagaatttggaaaatcaagaatagacattcaccaacattattattcat 240  Q
    |||| |||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  9275 gttaaaagaatttggaagatcaagaatggacatccaccaacattattattcat 9223  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 28350646 - 28350753
Alignment:
Q  134 caagtgaatgatcacattcggtcaaagatcactaacaatt--tttcactaactagagttataagaatttggaaaatcaagaatagacattcaccaacatt 231  Q
    |||||||||| |||||| |  ||||||| |||||||||||  || ||||||   |||||||| ||| |||||| ||||||||| ||||||||| ||| ||    
T  28350646 caagtgaatgttcacatgcaatcaaagagcactaacaattcattccactaatgggagttata-gaacttggaagatcaagaatggacattcactaacttt 28350744  T
Q  232 attattcat 240  Q
    |||||||||    
T  28350745 attattcat 28350753  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 27547312 - 27547211
Alignment:
Q  140 aatgatcacattcggtcaaagatcactaacaattt-ttcactaactagagttataagaatttggaaaatcaagaatagacattcaccaacattattattc 238  Q
    ||||||||||| |  ||||||| |||||||||||  ||||||||   || ||||||||||||| || ||||| ||| ||||| ||||||| |||||||||    
T  27547312 aatgatcacatgcaatcaaagagcactaacaattcattcactaatgggaattataagaatttgaaagatcaataatggacatccaccaactttattattc 27547213  T
Q  239 at 240  Q
    ||    
T  27547212 at 27547211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 27543850 - 27543797
Alignment:
Q  187 agttataagaatttggaaaatcaagaatagacattcaccaacattattattcat 240  Q
    |||||||||||||||||| || || ||| ||||| ||||||| |||||||||||    
T  27543850 agttataagaatttggaagataaaaaatggacatccaccaactttattattcat 27543797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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