View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_high_46 (Length: 209)
Name: NF0796_high_46
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_high_46 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 1563128 - 1563265
Alignment:
| Q |
8 |
ccaacaatatcaacattaccttttcatatcaatgaaacagaacgtgggattaaacatttagaatctcgtggaatgtagaatcatatactctaaacacatg |
107 |
Q |
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| T |
1563128 |
ccaacattatcagcattaccttttcatatcaatgaaacagaacgtgggattaaaaatttagaatctcgtggaatgtagaatcatatactctaaacacatg |
1563227 |
T |
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| Q |
108 |
aaagtaaagatgaatatctatgtaactcttaaatcaaa |
145 |
Q |
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| T |
1563228 |
aaagtaaagatgaatatctatgtaactcttaaatcaaa |
1563265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 1570767 - 1570688
Alignment:
| Q |
15 |
tatcaacattaccttttcatatcaatgaaacagaacgtgggattaaacatttagaatctcgtggaatgtagaatcatata |
94 |
Q |
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| T |
1570767 |
tatcagcattaccttctcatatcaatgaaacagaacataggattaaaaatttagaatctcatggaatgtagaaacatata |
1570688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 1093637 - 1093551
Alignment:
| Q |
8 |
ccaacaatatcaacattaccttttcatatcaatgaaacagaacgtgggattaaacatttagaatctcgtggaatgtagaatcatata |
94 |
Q |
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| T |
1093637 |
ccaacattatcagcattaccttctcatttcaattaaatcgaatgtcggattaaaaattaagaatctcatggaatgtagaaacatata |
1093551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 1570653 - 1570600
Alignment:
| Q |
86 |
aatcatatactc--taaacacatgaaagtaaagatgaatatctatgtaactctt |
137 |
Q |
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| T |
1570653 |
aatcatatactcaataaacacatgtaagtaaagatgaatattcatgtaactctt |
1570600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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