View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_high_48 (Length: 202)
Name: NF0796_high_48
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 31697373 - 31697189
Alignment:
| Q |
1 |
aaaaacttaaggccattgaggacaagtttgtttattttgatgatattgaagatgaagagtgtcctactttagtggaggatcgtggatacagaagtatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31697373 |
aaaaacttaaggccattgaggacaagtttgtttattttgatgatattgaagatgaagagtgtcctactttagtggaggatcgtggacacagaagtatttc |
31697274 |
T |
|
| Q |
101 |
tgagctgggtaccattgtagacgtattcaaatttcatatgcagcctcaactagctatttcctgtttcctttatttcttttgatgatgt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
31697273 |
cgagctgggtaccattgtagacgtattcaaatttcatat---gcctcaactagctatttcctgtttcctttatttccttttatgatgt |
31697189 |
T |
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