View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796_low_1 (Length: 884)

Name: NF0796_low_1
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796_low_1
NF0796_low_1
[»] chr3 (10 HSPs)
chr3 (585-855)||(7809917-7810187)
chr3 (142-360)||(25704749-25704967)
chr3 (360-516)||(7809622-7809778)
chr3 (142-360)||(8100228-8100447)
chr3 (360-459)||(7758817-7758918)
chr3 (523-593)||(7809826-7809896)
chr3 (11-78)||(25705031-25705098)
chr3 (360-434)||(7819111-7819185)
chr3 (277-360)||(25163895-25163979)
chr3 (273-353)||(36330665-36330746)
[»] chr4 (13 HSPs)
chr4 (144-360)||(4528448-4528665)
chr4 (144-360)||(15209400-15209618)
chr4 (141-302)||(15214795-15214957)
chr4 (263-360)||(55465674-55465772)
chr4 (9-78)||(15209684-15209753)
chr4 (9-78)||(15215020-15215089)
chr4 (282-360)||(23201712-23201791)
chr4 (174-313)||(31430315-31430459)
chr4 (277-360)||(41396563-41396647)
chr4 (273-360)||(44742519-44742607)
chr4 (308-360)||(31430598-31430650)
chr4 (174-242)||(23201614-23201683)
chr4 (273-352)||(13089634-13089714)
[»] chr1 (5 HSPs)
chr1 (142-360)||(32603120-32603339)
chr1 (177-360)||(6249796-6249978)
chr1 (266-360)||(6579798-6579893)
chr1 (266-360)||(17010857-17010952)
chr1 (299-360)||(38833478-38833539)
[»] scaffold0049 (1 HSPs)
scaffold0049 (171-360)||(13315-13504)
[»] chr8 (5 HSPs)
chr8 (142-360)||(15588104-15588323)
chr8 (263-360)||(24970854-24970952)
chr8 (277-360)||(9452577-9452661)
chr8 (278-360)||(30087482-30087565)
chr8 (273-321)||(24955111-24955160)
[»] chr7 (5 HSPs)
chr7 (197-359)||(38795315-38795477)
chr7 (263-360)||(27619247-27619345)
chr7 (264-360)||(28106872-28106969)
chr7 (266-348)||(9792510-9792593)
chr7 (284-360)||(12487919-12487996)
[»] chr2 (2 HSPs)
chr2 (197-360)||(10256882-10257045)
chr2 (142-193)||(21025016-21025068)
[»] chr5 (5 HSPs)
chr5 (174-359)||(31956296-31956486)
chr5 (266-360)||(29963886-29963981)
chr5 (266-360)||(30010817-30010912)
chr5 (273-360)||(3068589-3068677)
chr5 (284-360)||(31955548-31955625)
[»] chr6 (3 HSPs)
chr6 (266-359)||(26339376-26339470)
chr6 (277-360)||(1222563-1222647)
chr6 (182-363)||(15669479-15669660)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 585 - 855
Target Start/End: Original strand, 7809917 - 7810187
Alignment:
Q  585 tattttccataatttaatttccattaaaagttcttcttttcttgataattccttctttctgtatttccttgttatttcttttagaaaattgagagcaatg 684  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7809917 tattatccataatttaatttccattaacagttcttcttttcttgataattccttctttctgtatttccttgttatttcttttagaaaattgagagcaatg 7810016  T
Q  685 gagcaacatcaacgtcgtacaagaagaagtgtgttcatcgaagacaacgactcggttatgattttggatgctattgatctaaatccccctcctctttatc 784  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7810017 gagcaacatcaacgtcgtacaagaagaagtgtgttcatcgaagacaacgactcggttatgattttggatgctattgatctaaatccccctcctctttatc 7810116  T
Q  785 acacacttactagaaatccatcaagaaggttcacaagaaatttcataagatctacaacgactactccttat 855  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7810117 acacacttactagaaatccatcaagaaggttcacaagaaatttaataagatctacaacgactactccttat 7810187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 142 - 360
Target Start/End: Complemental strand, 25704967 - 25704749
Alignment:
Q  142 tggtttctgcgggaatcgatgtgtgggcagtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttg 241  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  25704967 tggtttctgcgggaatcgatgtgtgggcagtgaacaatagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagttgcttctatttg 25704868  T
Q  242 atttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattgtg-ttggccctacttctccttaaaagcaaaagagaagtggaaaat 340  Q
    |||||||||| |||       ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | |||||||||| |||||    
T  25704867 atttctttcc-ttccaaaaaagatacttctattattaataactttattaaaattgtgtttggccctacttctccttaaaagtagaagagaagtgaaaaat 25704769  T
Q  341 aaggagggccaaacatgctc 360  Q
    |||||||| |||||||||||    
T  25704768 aaggagggtcaaacatgctc 25704749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 360 - 516
Target Start/End: Original strand, 7809622 - 7809778
Alignment:
Q  360 cctagctataaataaggttgttctgtcacactctctatcttacattcttgcttattcttcgataactctaaggttcttgcgccacccttgttctgtttct 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7809622 cctagctataaataaggttgttctgtcacactctctatcttacattcttgcttattcttcgataactctaaggttcttgcgccacccttcttctgtttct 7809721  T
Q  460 gccctaaaccaaaagggttctatttttcacactttattttttcatcatcactcaata 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7809722 gccctaaaccaaaagggttctatttttcacactttattttttcatcattactcaata 7809778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 142 - 360
Target Start/End: Original strand, 8100228 - 8100447
Alignment:
Q  142 tggtttctgcgggaatcgatgtgtgggca-gtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctattt 240  Q
    |||||| |||||||||||||||  ||||  ||||| | ||||||||||||||||   | |||||||||||||||||||||||||||||||| ||||||||    
T  8100228 tggtttgtgcgggaatcgatgttggggcgtgtgaataatagctccgaaaagttgtctagaagttcaattttacatcttattttaaaagtcatttctattt 8100327  T
Q  241 gatttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattgtg-ttggccctacttctccttaaaagcaaaagagaagtggaaaa 339  Q
    |||||||||||||||       ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||| | |||||||||| ||||    
T  8100328 gatttctttcctttc-aaaaaagatacttctcttattaagaactttattaaaattgtgtttggctctacttctccttgaaagtagaagagaagtgaaaaa 8100426  T
Q  340 taaggagggccaaacatgctc 360  Q
    |||| ||||||||||||||||    
T  8100427 taagcagggccaaacatgctc 8100447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 360 - 459
Target Start/End: Original strand, 7758817 - 7758918
Alignment:
Q  360 cctagctataaataaggttgttctgtcacactctctat--cttacattcttgcttattcttcgataactctaaggttcttgcgccacccttgttctgttt 457  Q
    ||||||||||||| |||||||| ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7758817 cctagctataaattaggttgttttgtcacactctctctgtcttacattcttgcttattcttcgataactctaaggttcttgcgccacccttgttctcttt 7758916  T
Q  458 ct 459  Q
    ||    
T  7758917 ct 7758918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 523 - 593
Target Start/End: Original strand, 7809826 - 7809896
Alignment:
Q  523 tgtgttgattcttacgccacgctttctctgtttctttcaagtgccctaaacctaaaggtttctattttcca 593  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7809826 tgtgttgattcttacgccacgctttctctgtttctttcaagtgccctaaacctaaaggtttctattttcca 7809896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 25705098 - 25705031
Alignment:
Q  11 cagagaatggatggaggagaaagttgaatcagaatatatacaattaggttatgtgttttagcgggtat 78  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  25705098 cagagaatgaatggaggagaaagttggatcagaatatatacaattaggttatgtgttttggcgggtat 25705031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 360 - 434
Target Start/End: Original strand, 7819111 - 7819185
Alignment:
Q  360 cctagctataaataaggttgttctgtcacactctctatcttacattcttgcttattcttcgataactctaaggtt 434  Q
    ||||||||||||| ||||||||| | |||||||||| ||||||||| |||||||||||||||| |||||||||||    
T  7819111 cctagctataaattaggttgttcgggcacactctctctcttacatttttgcttattcttcgattactctaaggtt 7819185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 277 - 360
Target Start/End: Complemental strand, 25163979 - 25163895
Alignment:
Q  277 taagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    ||||| |||| || |||||||||| ||||||||||||||||| ||| |||| | |||| ||||||||||||||||||||||||||    
T  25163979 taagagctttttttaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaaaataaggagggccaaacatgctc 25163895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 36330746 - 36330665
Alignment:
Q  273 ttattaagaactttattaaaattgtgttgg-ccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaa 353  Q
    ||||||| | |||||||||||||||||| | ||| |||||| |||| ||| | ||||||||||||||||||| |||||||||    
T  36330746 ttattaaaagctttattaaaattgtgtttgaccccacttcttcttagaagtagaagagaagtggaaaataagtagggccaaa 36330665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 2e-85; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 144 - 360
Target Start/End: Original strand, 4528448 - 4528665
Alignment:
Q  144 gtttctgcgggaatcgatgtgtgggcagtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgat 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4528448 gtttctgcgggaatcgatgtgtgggcagtgaacagtagctccgaaaagttggccaaaagttcaattttacatcttattttaaaagtcacttctatttgat 4528547  T
Q  244 ttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattgtg-ttggccctacttctccttaaaagcaaaagagaagtggaaaataa 342  Q
    |||||||||| |       |||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| | ||||||||||||||||||    
T  4528548 ttctttccttccaaaaaaagatacttctattattaagaactttattaaaattgtgtttggccctacttcttcttgaaagtagaagagaagtggaaaataa 4528647  T
Q  343 ggagggccaaacatgctc 360  Q
    |||||||||| |||||||    
T  4528648 ggagggccaagcatgctc 4528665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 144 - 360
Target Start/End: Complemental strand, 15209618 - 15209400
Alignment:
Q  144 gtttctgcgggaatcgatgtgtgggcagtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgat 243  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  15209618 gtttctgcgggaatcgatgtgtgggcagtgaatggtagctccgaaaagttggccaaaagttcaattttacatcttattttaaaagtcacttctatttcat 15209519  T
Q  244 ttctttcctttc-nnnnnnngatacttctattattaagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaata 341  Q
    |||||||||| |        |||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||  | |||||||||||||||||    
T  15209518 ttctttccttccaaaaaaaagatacttcaattattaagaactttattaaaattgtgttgggtcatacttctccttaaaactagaagagaagtggaaaata 15209419  T
Q  342 aggagggccaaacatgctc 360  Q
    |||||| ||||||||||||    
T  15209418 aggaggaccaaacatgctc 15209400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 141 - 302
Target Start/End: Complemental strand, 15214957 - 15214795
Alignment:
Q  141 ctggtttctgcgggaatcgatgtgtgggcagtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctattt 240  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  15214957 ctggtttctgcgggaatcgatgtgtgggcagtgaacggtagctccgaaaagttggccaaaagttcaattttacatcttattttaaaagtcacttttattt 15214858  T
Q  241 gatttctttcctttc-nnnnnnngatacttctattattaagaactttattaaaattgtgttgg 302  Q
     |||||||||||| |        |||||||| |||||||||||||||||||||||||||||||    
T  15214857 catttctttccttccaaaaaaaagatacttcaattattaagaactttattaaaattgtgttgg 15214795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 55465772 - 55465674
Alignment:
Q  263 gatacttctattattaagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||| | |||||||||||||||||||||||| |||||||||||    
T  55465772 gatacttctattattaagaattttattaaaattgtgtttggctctacttctccttgaaagtataagagaagtggaaaataaggagggtcaaacatgctc 55465674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 15209753 - 15209684
Alignment:
Q  9 agcagagaatggatggaggagaaagttgaatcagaatatatacaattaggttatgtgttttagcgggtat 78  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  15209753 agcagagaatggatggaggagaaagttggatcagaatatatacaattaggttatgtgttttggcgggtat 15209684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 15215089 - 15215020
Alignment:
Q  9 agcagagaatggatggaggagaaagttgaatcagaatatatacaattaggttatgtgttttagcgggtat 78  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  15215089 agcagagaatggatggaggagaaagttagatcagaatatatacaattaggttatgtgttttggcgggtat 15215020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 23201712 - 23201791
Alignment:
Q  282 actttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||||||||||||| |||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  23201712 actttattaaaattatgtttggccctacttctccttagaagtagaagagaagtggaaaataaggagggccaaacatgctc 23201791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 174 - 313
Target Start/End: Original strand, 31430315 - 31430459
Alignment:
Q  174 aacagtagctccgaa-aagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnn---gatactt 269  Q
    ||||||||||||||| |||||   |||||||||||||||| ||||||||||  ||||||||| ||||||||||| || ||||           |||||||    
T  31430315 aacagtagctccgaagaagttatgcaaaagttcaattttatatcttattttggaagtcacttttatttgatttcattactttaaaaaaaaaaagatactt 31430414  T
Q  270 ctattattaagaactttattaaaattgtg-ttggccctacttctc 313  Q
    |||||||||||||||||||||||||| || |||||||||||||||    
T  31430415 ctattattaagaactttattaaaattatgtttggccctacttctc 31430459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 277 - 360
Target Start/End: Complemental strand, 41396647 - 41396563
Alignment:
Q  277 taagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||||  |||| | |||| ||||||||||||||||||||||||||    
T  41396647 taagagcttttttaaaattgtgtttggccctacttctccttaaaaataaaaaataagtagaaaataaggagggccaaacatgctc 41396563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 273 - 360
Target Start/End: Complemental strand, 44742607 - 44742519
Alignment:
Q  273 ttattaagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    ||||||||| |||||||||||||||||| ||||| |||||| |||| ||| | |||||||||| |||||||| ||||||||||||||||    
T  44742607 ttattaagagctttattaaaattgtgtttggccccacttcttcttagaagtagaagagaagtgaaaaataagtagggccaaacatgctc 44742519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 31430598 - 31430650
Alignment:
Q  308 cttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  31430598 cttctccttagaagtagaagagaagtggaaaataaggagggccaaacatgctc 31430650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 23201614 - 23201683
Alignment:
Q  174 aacagtagctccgaaaa-gttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttga 242  Q
    ||||||||||||||||| |||   |||||||||||||||| ||||||||||  ||||||||| |||||||    
T  23201614 aacagtagctccgaaaaagttatgcaaaagttcaattttatatcttattttggaagtcacttttatttga 23201683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 273 - 352
Target Start/End: Complemental strand, 13089714 - 13089634
Alignment:
Q  273 ttattaagaactttattaaaattgtg-ttggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaa 352  Q
    ||||||||| |||| ||||||||||| ||| ||| |||||| |||| ||| | |||||||||| |||||||| ||||||||    
T  13089714 ttattaagagctttgttaaaattgtgtttgaccccacttcttcttagaagtagaagagaagtgaaaaataagtagggccaa 13089634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 6e-61; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 142 - 360
Target Start/End: Complemental strand, 32603339 - 32603120
Alignment:
Q  142 tggtttctgcgggaatcgatgtgtgggca-gtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctattt 240  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||   | || ||||||||||||||||||||||||||||| ||||||||    
T  32603339 tggtttctgcgggaatcgatgtgcgggcctgtgaacagtagctccgaaaagttgtctagaaattcaattttacatcttattttaaaagtcatttctattt 32603240  T
Q  241 gatttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattgtg-ttggccctacttctccttaaaagcaaaagagaagtggaaaa 339  Q
    ||||||||||| |||       ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| | |||||||||| ||||    
T  32603239 gatttctttcc-ttccaaaaaagatacttctcttattaagaactttattaaaattgtgtttggccctacttctccttgaaagtagaagagaagtgaaaaa 32603141  T
Q  340 taaggagggccaaacatgctc 360  Q
    |||| ||||||||||||||||    
T  32603140 taagcagggccaaacatgctc 32603120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 177 - 360
Target Start/End: Original strand, 6249796 - 6249978
Alignment:
Q  177 agtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnngatacttctattat 276  Q
    ||||||||||||||||||   | |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||       ||||||||| ||||    
T  6249796 agtagctccgaaaagttgtctagaagttcaattttacatcttattttaaaagtcatttctatttgatttctttcc-ttctaaaaaagatacttcttttat 6249894  T
Q  277 taagaactttattaaaattgtg-ttggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||||||||||||||||||||| ||| || ||||||||||| |||| |||| ||||||| |||||||| |||| |||||||||||    
T  6249895 taagaactttattaaaattgtgtttgaccatacttctccttgaaagtaaaa-agaagtgaaaaataagcagggtcaaacatgctc 6249978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 266 - 360
Target Start/End: Original strand, 6579798 - 6579893
Alignment:
Q  266 acttctattattaagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||||| ||||||||| |||||||||||||||||| ||||| ||||  ||||| ||| | |||| |||||||||||||| ||||||||||||||||    
T  6579798 acttcttttattaagagctttattaaaattgtgtttggccccactttaccttagaagtagaagataagtggaaaataagcagggccaaacatgctc 6579893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 266 - 360
Target Start/End: Complemental strand, 17010952 - 17010857
Alignment:
Q  266 acttctattattaagaactttattaaaattgtg-ttggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||||| ||||||||||||| |||||||||||| ||||||| |||||| |||| ||| | |||| ||||| ||| |||| ||||||||||||||||    
T  17010952 acttcttttattaagaacttaattaaaattgtgtttggccccacttcttcttagaagtagaagataagtgaaaattaagcagggccaaacatgctc 17010857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 38833539 - 38833478
Alignment:
Q  299 ttggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    ||||||| |||||| |||| ||| | ||||||||||||||||||| |||| |||||||||||    
T  38833539 ttggccccacttcttcttagaagtagaagagaagtggaaaataagtagggtcaaacatgctc 38833478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 171 - 360
Target Start/End: Original strand, 13315 - 13504
Alignment:
Q  171 gtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnngatacttc 270  Q
    ||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||       ||||||||    
T  13315 gtgaacagtagttccgaaaagttgtttagaagttcaattttacatcttattttaaaagtcatttctatttgatttctttcctttc-aaaaaagatacttc 13413  T
Q  271 tattattaagaactttattaaaattgtg-ttggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    | |||||||||||||||||||||||||| |||||||||||||||||| |||| | |||||||||| ||| |||| ||||||||||||||||    
T  13414 tcttattaagaactttattaaaattgtgtttggccctacttctccttgaaagtagaagagaagtgaaaactaagcagggccaaacatgctc 13504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 5e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 142 - 360
Target Start/End: Original strand, 15588104 - 15588323
Alignment:
Q  142 tggtttctgcgggaatcgatgtgtgggca-gtgaacagtagctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctattt 240  Q
    |||||||||||||||||||||   ||||  ||||||||||| ||||||||||||   | ||||| |||||||||||||||||||||||||| ||||||||    
T  15588104 tggtttctgcgggaatcgatgctggggcgtgtgaacagtagttccgaaaagttgtctagaagtttaattttacatcttattttaaaagtcatttctattt 15588203  T
Q  241 gatttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattgtg-ttggccctacttctccttaaaagcaaaagagaagtggaaaa 339  Q
    ||||||||||||||        ||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |||| | |||||||||| ||||    
T  15588204 gatttctttccttt-taaaaaagatacttctcttattaagaactttattaaaattgtgtttgaccctacttctccttgaaagtagaagagaagtgaaaaa 15588302  T
Q  340 taaggagggccaaacatgctc 360  Q
    |||| |||| |||||||||||    
T  15588303 taagcagggtcaaacatgctc 15588323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 24970952 - 24970854
Alignment:
Q  263 gatacttctattattaagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| ||| | |||||||||| |||||||||||||||||||||||||    
T  24970952 gatacttctattattaagaactttattaaaattatgtttggccctacttctctttagaagtagaagagaagtgaaaaataaggagggccaaacatgctc 24970854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 277 - 360
Target Start/End: Complemental strand, 9452661 - 9452577
Alignment:
Q  277 taagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    ||||| |||| ||||||||||||| ||||||||||||||||| ||| |||| | |||||||||||||||||||||||||||||||    
T  9452661 taagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtggaaaataaggagggccaaacatgctc 9452577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 30087482 - 30087565
Alignment:
Q  278 aagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||||||||  |||||||||||| ||||||||||||||||||||    || | |||| |||||| |||||||||||||||||||    
T  30087482 aagaactttcctaaaattgtgtttggccctacttctccttaaaattggaatataagtagaaaatcaggagggccaaacatgctc 30087565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 24955160 - 24955111
Alignment:
Q  273 ttattaagaactttattaaaattgtg-ttggccctacttctccttaaaag 321  Q
    ||||||||| ||||||||||||| || |||||||||||||| ||||||||    
T  24955160 ttattaagagctttattaaaattatgtttggccctacttcttcttaaaag 24955111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 197 - 359
Target Start/End: Complemental strand, 38795477 - 38795315
Alignment:
Q  197 caaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattg 296  Q
    |||||||||||||||| ||||||||||  ||||||||| ||||||||||| ||| |||        |||||||||||||||||||||||||||||||||     
T  38795477 caaaagttcaattttatatcttattttggaagtcacttttatttgatttcattc-tttaaaaaaaagatacttctattattaagaactttattaaaatta 38795379  T
Q  297 tgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgct 359  Q
    |||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||    
T  38795378 tgtttggccctacttctccttagaagtagaagagaagtggaaaataaggagggccaaacatgct 38795315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 27619345 - 27619247
Alignment:
Q  263 gatacttctattattaagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| | ||||||| ||||||||||| ||||||||||||||||    
T  27619345 gatacttctattattaagaactttattaaaattatgtttggccctacttctccttagaagtagaagagaaatggaaaataagaagggccaaacatgctc 27619247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 264 - 360
Target Start/End: Complemental strand, 28106969 - 28106872
Alignment:
Q  264 atacttctattattaagaactttattaaaattgtg-ttggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||||||||||||||||||||||||||||||| || ||||  |||||||| |||| ||| | ||||||||||||||||||||||| ||||||| ||||    
T  28106969 atacttctattattaagaactttattaaaattatgtttggttctacttcttcttagaagtagaagagaagtggaaaataaggaggaccaaacacgctc 28106872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 9792510 - 9792593
Alignment:
Q  266 acttctattattaagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggaggg 348  Q
    |||||| ||||||||| |||||||||||||||||| ||||| |||||| |||||||| |||||| |||||||||||||||||||    
T  9792510 acttcttttattaagagctttattaaaattgtgtttggccccacttcttcttaaaagtaaaagataagtggaaaataaggaggg 9792593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 12487996 - 12487919
Alignment:
Q  284 tttattaaaattgtgttgg-ccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    ||||||||||||||||| | |||||||||| |||| |||  ||||| |||| ||||||||||||||||||||||||||    
T  12487996 tttattaaaattgtgttcgaccctacttcttcttagaagtgaaagataagtagaaaataaggagggccaaacatgctc 12487919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 5e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 197 - 360
Target Start/End: Complemental strand, 10257045 - 10256882
Alignment:
Q  197 caaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnngatacttctattattaagaactttattaaaattg 296  Q
    |||||||||||||||| ||||||||||  ||||||||| ||||||||||| ||| |||        |||||||||||||||||||||||||||||||||     
T  10257045 caaaagttcaattttatatcttattttggaagtcacttttatttgatttcattc-tttaaaaaaaagatacttctattattaagaactttattaaaatta 10256947  T
Q  297 tgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||| ||||||||||||||||| ||| | |||||||  |||||||||||||||||||||||||||    
T  10256946 tgtttggccctacttctccttagaagtagaagagaacgggaaaataaggagggccaaacatgctc 10256882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 21025016 - 21025068
Alignment:
Q  142 tggtttctgcgggaatcgatgtgtggg-cagtgaacagtagctccgaaaagtt 193  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  21025016 tggtttctgtgggaatcgatgtgtggggcagtgaacagtagctccgaaaagtt 21025068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 3e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 174 - 359
Target Start/End: Original strand, 31956296 - 31956486
Alignment:
Q  174 aacagtagctccgaa-aagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnn---gatactt 269  Q
    ||||||||||||||| |||||   |||||||||||||||| ||||||||||  ||||||||| ||||||||||| ||| ||            || ||||    
T  31956296 aacagtagctccgaagaagttacgcaaaagttcaattttatatcttatttttgaagtcacttttatttgatttccttctttaaaaaaaaaaaagaaactt 31956395  T
Q  270 ctattattaagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgct 359  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||    
T  31956396 ctattattaagaactttattaaaattatgtttggccctacttctccttagaagtagaagagaagcggaaaataaggagggccaaacatgct 31956486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 266 - 360
Target Start/End: Complemental strand, 29963981 - 29963886
Alignment:
Q  266 acttctattattaagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||||||||||||||| |||||| |||||| |||| ||||| ||||||| ||| ||| |||||| |||||| ||||||| ||||||||||||||||    
T  29963981 acttctattattaagagctttatcaaaattatgtttggccccacttctctttagaagtaaaagataagtggcaaataagcagggccaaacatgctc 29963886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 266 - 360
Target Start/End: Original strand, 30010817 - 30010912
Alignment:
Q  266 acttctattattaagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||||||||||||||| |||||| |||||| |||| ||||| ||||||| ||| ||| |||||| |||||| ||||||| ||||||||||||||||    
T  30010817 acttctattattaagagctttatcaaaattatgtttggccccacttctctttagaagtaaaagataagtggcaaataagcagggccaaacatgctc 30010912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 273 - 360
Target Start/End: Original strand, 3068589 - 3068677
Alignment:
Q  273 ttattaagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||| |||| |||||||||||||||||| |||||||||| ||  || |||   ||||||||| ||||||||||||||||||||||||||    
T  3068589 ttataaagagctttattaaaattgtgtttggccctacttatctgtagaagtggaagagaagtagaaaataaggagggccaaacatgctc 3068677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 31955625 - 31955548
Alignment:
Q  284 tttattaaaattgtgttg-gccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    |||||||||||| ||||  |||| ||||||||||| ||  | ||||||||||||||||||  ||||||||||||||||    
T  31955625 tttattaaaattatgtttagcccaacttctccttagaaatagaagagaagtggaaaataaaaagggccaaacatgctc 31955548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 26339376 - 26339470
Alignment:
Q  266 acttctattattaagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgct 359  Q
    |||||||||||||||| |||||| |||||| |||| ||||| ||||||| ||||||| |||||| || ||||||||||| |||| ||||||||||    
T  26339376 acttctattattaagagctttatcaaaattatgtttggccccacttctctttaaaagtaaaagataaatggaaaataagcagggtcaaacatgct 26339470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 277 - 360
Target Start/End: Complemental strand, 1222647 - 1222563
Alignment:
Q  277 taagaactttattaaaattgtgtt-ggccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctc 360  Q
    ||||| |||| ||||||||||||| ||||||||||||| ||| ||| |||| | |||| ||||||||| |||| |||||||||||    
T  1222647 taagagcttttttaaaattgtgtttggccctacttctctttataagtaaaaaataagtagaaaataagaagggacaaacatgctc 1222563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 363
Target Start/End: Original strand, 15669479 - 15669660
Alignment:
Q  182 ctccgaaaagttggtcaaaagttcaattttacatcttattttaaaagtcacttctatttgatttctttcctttcnnnnnnngatacttctattattaaga 281  Q
    |||||| |||||| || |||||||| |||  ||||||||||| |||||||||| ||||  ||||| ||| || |       || |||| | |||||||||    
T  15669479 ctccgagaagttgctccaaagttcattttctcatcttatttttaaagtcacttttattacatttccttcattgcaaaaaa-gacacttattttattaaga 15669577  T
Q  282 actttattaaaattgtgttgg-ccctacttctccttaaaagcaaaagagaagtggaaaataaggagggccaaacatgctccta 363  Q
    | || |||||||||||||| | ||| |||||| |||| ||| | |||| ||||||||| | || |||||||||||||||||||    
T  15669578 atttaattaaaattgtgtttgaccccacttcttcttagaagtagaagataagtggaaattgagtagggccaaacatgctccta 15669660  T

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