View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_10 (Length: 671)
Name: NF0796_low_10
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 102 - 660
Target Start/End: Original strand, 20489034 - 20489587
Alignment:
| Q |
102 |
tgtgtcagtcttcgataccaacacatgttaaacactggacacgccttcaataacaactgtaggtgctacagagctacatatgcctacgtattgtgtctgt |
201 |
Q |
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| T |
20489034 |
tgtgtcggtgttcaataccaacatatggtgaacactggacacgccttcaataacaactgtagatgcaacagagctacatatgtctacgtattgtgtctgt |
20489133 |
T |
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| Q |
202 |
gtccggtgttcatgtctccgttaccatatagaagaaagtggggtatatgtaagtgggaacagtgctttaatccttctaatggtgttaacaccagaagttt |
301 |
Q |
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| T |
20489134 |
gtccggtgctcatgtctccgttaccatatagaagaaagtggggtttatgtaagtgggaacagtgcttttatccttctcatggtgttaacaccagaagttt |
20489233 |
T |
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| Q |
302 |
gtgttagagattgtggggagcaaagagctgtgtttcattggattctatatgttttaattggtttgagatggaactgagtgttgagtaggttgttggctat |
401 |
Q |
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| T |
20489234 |
gtgttagagattgtggggagcaaagagctgtgtttcattggattctatatgtttcaattggtttgagatggaactgagtgttgagtaggttgttggctat |
20489333 |
T |
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| Q |
402 |
ggatatatacatccaatggtcatggtcatggtcatggccatgatgagcatgtatgtacatatacaatctaaccaaccttcctgcgtttatatcattatac |
501 |
Q |
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| T |
20489334 |
ggatatatacatcca------atggtcatggtcatggccatgatgagcatgtatgtagatatacaatctaaccaaccttcctgtgtttatatcattatac |
20489427 |
T |
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| Q |
502 |
agatgaagaataattattacacagatcccaccataattttgagagcttcaaagtcactc-tttaacaaattaaaagtaattgcttggagggtaatttctt |
600 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20489428 |
agatgaagaataattattaaagagatcccaccataattttgagagcttcaaagtcactcttttaacaaattaaaagtaattgcttggagggtaatttctt |
20489527 |
T |
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| Q |
601 |
ttgactaggattgatttactatggcccattaatatctcactgcttcctctttaggttcat |
660 |
Q |
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| T |
20489528 |
ttgactaggattgatttactatggcccattaatatctcactgcttcctctttaggttcat |
20489587 |
T |
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