View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796_low_12 (Length: 645)

Name: NF0796_low_12
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796_low_12
NF0796_low_12
[»] chr2 (6 HSPs)
chr2 (225-478)||(18724598-18724850)
chr2 (225-446)||(17651339-17651560)
chr2 (226-440)||(41849094-41849306)
chr2 (545-627)||(18724917-18724991)
chr2 (549-618)||(9929517-9929583)
chr2 (548-624)||(32201032-32201105)
[»] chr1 (3 HSPs)
chr1 (330-446)||(16426512-16426629)
chr1 (335-435)||(50127132-50127232)
chr1 (337-446)||(3387735-3387844)
[»] scaffold0012 (1 HSPs)
scaffold0012 (330-446)||(209269-209385)
[»] chr7 (10 HSPs)
chr7 (339-446)||(9729851-9729958)
chr7 (324-379)||(11820489-11820544)
chr7 (330-449)||(27993979-27994101)
chr7 (330-381)||(48598453-48598504)
chr7 (335-380)||(11815490-11815535)
chr7 (325-422)||(11810876-11810973)
chr7 (330-366)||(11812535-11812571)
chr7 (566-624)||(45216141-45216197)
chr7 (324-403)||(11814358-11814438)
chr7 (225-297)||(11816795-11816867)
[»] chr8 (8 HSPs)
chr8 (324-377)||(13097587-13097640)
chr8 (337-446)||(18393524-18393633)
chr8 (352-446)||(27401903-27401997)
chr8 (324-379)||(2889701-2889756)
chr8 (330-379)||(3159971-3160020)
chr8 (225-306)||(15131819-15131900)
chr8 (545-625)||(27401702-27401779)
chr8 (225-309)||(13097657-13097741)
[»] scaffold1723 (1 HSPs)
scaffold1723 (330-446)||(304-419)
[»] chr3 (1 HSPs)
chr3 (324-435)||(42718559-42718669)
[»] chr6 (4 HSPs)
chr6 (338-446)||(2602169-2602275)
chr6 (324-381)||(17261739-17261796)
chr6 (331-381)||(6812636-6812686)
chr6 (225-306)||(12844132-12844213)
[»] chr4 (2 HSPs)
chr4 (229-306)||(32594961-32595038)
chr4 (330-446)||(32593906-32594017)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 225 - 478
Target Start/End: Original strand, 18724598 - 18724850
Alignment:
Q  225 ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatatttggannnnnnnnnctac 324  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |         ||||    
T  18724598 ctttacttcgacactccttagaccagtgtctgacacctatatatcacttaaaagaggcgtgtcagacaactcagacaaatatctg-aattttttctctac 18724696  T
Q  325 ttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttcc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18724697 ttccgcacatagtagattcaagagttaaagatgtgtgagaaatgctgatcaacgaggaattatagacatcaaagttgatgacagcgcatttaaattttcc 18724796  T
Q  425 aatagtagatggataaagaaagatctgatgaaataaattactccatttatatgc 478  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  18724797 aatagtagatggataaagaaaggtctgatgaaataaattactccatttgtatgc 18724850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 225 - 446
Target Start/End: Complemental strand, 17651560 - 17651339
Alignment:
Q  225 ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatatttggannnnnnnnnctac 324  Q
    ||||||||||||||||||| |||| ||||| ||||| |||||| |||||| | |||||||||| ||||||| |||||||||| | ||         || |    
T  17651560 ctttacttcgacactcctttgaccggtgtccgacacttatataacacttatatgaggcgtgtcggacaacttagacaaatatctagatttatttttctgc 17651461  T
Q  325 ttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttcc 424  Q
    || | |||| | |||||||||||||||||| ||||||| |||||||||||||||||   | |||||||| ||||||||| ||| || |||||| |||| |    
T  17651460 tttcacacacaatagattcaagagttaaaggtgtgtgaaaaatgttgatcaacgagaggttatagacattaaagttgattacaacgtatttaagtttttc 17651361  T
Q  425 aatagtagatggataaagaaag 446  Q
    ||||||||||||||||| ||||    
T  17651360 aatagtagatggataaataaag 17651339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 226 - 440
Target Start/End: Complemental strand, 41849306 - 41849094
Alignment:
Q  226 tttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatatttggannnnnnnnnctact 325  Q
    |||| ||||||||||||| |||  ||||| ||||| |||||| |||||| | |||||||||| ||||||||| |||||| | || |         || ||    
T  41849306 tttatttcgacactccttggactggtgtccgacacctatataacacttatatgaggcgtgtcggacaactcaaacaaatgtctgaatttttttctctgct 41849207  T
Q  326 tccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttcca 425  Q
    |||  ||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||  | ||||| ||||||||| |||  |  ||| |||||| ||    
T  41849206 tcc--acatagtagattcaagaattaaagatgtgtgagaaaagttgagcaacgaggcattctggacattaaagttgattacaatgttttttaatttttca 41849109  T
Q  426 atagtagatggataa 440  Q
    ||| || ||||||||    
T  41849108 ataataaatggataa 41849094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 627
Target Start/End: Original strand, 18724917 - 18724991
Alignment:
Q  545 agcggtgttggtgtcctatggttttttacattattggtgtcgacgtgtccgtgtgtcagtgtcgtatcaagtgtccgtgtcga 627  Q
    |||||||| ||||||||||||||||||||||||| |||||||||        || ||||||||||||||||||||||||||||    
T  18724917 agcggtgtcggtgtcctatggttttttacattatcggtgtcgac--------gtatcagtgtcgtatcaagtgtccgtgtcga 18724991  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 549 - 618
Target Start/End: Complemental strand, 9929583 - 9929517
Alignment:
Q  549 gtgttggtgtcctatggttttttacattattggtgtcgacgtgtccgtgtgtcagtgtcgtatcaagtgt 618  Q
    |||||||||||||||  ||||||||||||  |||||||||||||||  ||||||||||||| ||||||||    
T  9929583 gtgttggtgtcctata-ttttttacattagcggtgtcgacgtgtcc--gtgtcagtgtcgtgtcaagtgt 9929517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 624
Target Start/End: Original strand, 32201032 - 32201105
Alignment:
Q  548 ggtgttggtgtcctatggttttttacattattggtgtcgacgtgtccgtgtgtcagtgtcgtatcaagtgtccgtgt 624  Q
    ||||| ||||||||||  ||||||||||||  |||||||||||||||  ||||||||||||| ||| |||| |||||    
T  32201032 ggtgtcggtgtcctata-ttttttacattagcggtgtcgacgtgtcc--gtgtcagtgtcgtgtcaggtgttcgtgt 32201105  T

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Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 330 - 446
Target Start/End: Complemental strand, 16426629 - 16426512
Alignment:
Q  330 cacatagtagattcaagag-ttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttccaata 428  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||| ||||||||||||| |||||    
T  16426629 cacatagtagattcaaggggttaaagatgtgtgagaaatgttgatcaacgaggagttatagacattaaagttgattacagtgcatttaaatttttcaata 16426530  T
Q  429 gtagatggataaagaaag 446  Q
     ||||| |||||| ||||    
T  16426529 atagatagataaataaag 16426512  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 335 - 435
Target Start/End: Original strand, 50127132 - 50127232
Alignment:
Q  335 agtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttccaatagtagat 434  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||  | |||||||| ||||||||   ||||||||||||||||| | |||||||||    
T  50127132 agtagattcaagagttaaagatgtatgagaaatattgattaacgaggggttatagacattaaagttgaatgcagcgcatttaaatttttcgatagtagat 50127231  T
Q  435 g 435  Q
    |    
T  50127232 g 50127232  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 337 - 446
Target Start/End: Complemental strand, 3387844 - 3387735
Alignment:
Q  337 tagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttccaatagtagatgg 436  Q
    ||||||||||||||||||||||||||||||||||||||||  | |  | |||||||| ||||||||| ||| ||  |||||||||| | || |||||||     
T  3387844 tagattcaagagttaaagatgtgtgagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaatttttcgatggtagatga 3387745  T
Q  437 ataaagaaag 446  Q
    ||||| ||||    
T  3387744 ataaataaag 3387735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 330 - 446
Target Start/End: Complemental strand, 209385 - 209269
Alignment:
Q  330 cacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttccaatag 429  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||  | || ||||| |||||| || ||| ||  |||||||||| | || |    
T  209385 cacatggtagattcaagagttaaagatttgtgagaaatgttgatcaacgaggggttatcgacattaaagtttattacaacgtttttaaatttttcgattg 209286  T
Q  430 tagatggataaagaaag 446  Q
    |||||||||||| ||||    
T  209285 tagatggataaataaag 209269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 339 - 446
Target Start/End: Original strand, 9729851 - 9729958
Alignment:
Q  339 gattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttccaatagtagatggat 438  Q
    |||||||||||||||||||||||||||||||||||||||||    |  |  |||| ||||||||| ||| |||||||||||||| | ||||||| |||||    
T  9729851 gattcaagagttaaagatgtgtgagaaatgttgatcaacgaaaggttttttacattaaagttgattacaacgcatttaaatttttcgatagtaggtggat 9729950  T
Q  439 aaagaaag 446  Q
    ||| ||||    
T  9729951 aaataaag 9729958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 324 - 379
Target Start/End: Original strand, 11820489 - 11820544
Alignment:
Q  324 cttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacga 379  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11820489 cttccacacacagtagattcaagagttaaagatgtgtgagaaatgttgatcaacga 11820544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 330 - 449
Target Start/End: Complemental strand, 27994101 - 27993979
Alignment:
Q  330 cacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgaca---gcgcatttaaattttccaa 426  Q
    |||| ||||||||||||||||||||||||||||||||| || ||||| ||||  | |||||||| |||||| || |||   ||   |||||||||| | |    
T  27994101 cacacagtagattcaagagttaaagatgtgtgagaaatatttatcaaggagggtttatagacattaaagtttattacaaatgcatttttaaatttttcga 27994002  T
Q  427 tagtagatggataaagaaagatc 449  Q
    | ||||||||||||| |||||||    
T  27994001 tggtagatggataaataaagatc 27993979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 48598504 - 48598453
Alignment:
Q  330 cacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgagg 381  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| ||||    
T  48598504 cacatcgtggattcaagagttaaagatgtgtgagaaatgttgatcaatgagg 48598453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 11815490 - 11815535
Alignment:
Q  335 agtagattcaagagttaaagatgtgtgagaaatgttgatcaacgag 380  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||    
T  11815490 agtagattcaagagttagagatgtttgagaaatgttgatcaacgag 11815535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 325 - 422
Target Start/End: Original strand, 11810876 - 11810973
Alignment:
Q  325 ttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaatttt 422  Q
    |||| |||| ||||||||||||||||||||   |||||||||||||||||| |||||  | |||||||| |||  |||| || |||  ||||||||||    
T  11810876 ttccacacaaagtagattcaagagttaaagccttgtgagaaatgttgatcagcgagggtttatagacataaaaaatgataacggcgtttttaaatttt 11810973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 11812535 - 11812571
Alignment:
Q  330 cacatagtagattcaagagttaaagatgtgtgagaaa 366  Q
    |||| ||||||||||||||||||||||||||||||||    
T  11812535 cacacagtagattcaagagttaaagatgtgtgagaaa 11812571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 566 - 624
Target Start/End: Original strand, 45216141 - 45216197
Alignment:
Q  566 ttttttacattattggtgtcgacgtgtccgtgtgtcagtgtcgtatcaagtgtccgtgt 624  Q
    ||||||||||||  |||||||||||||||  ||||||||||||| ||| ||||||||||    
T  45216141 ttttttacattagcggtgtcgacgtgtcc--gtgtcagtgtcgtgtcaggtgtccgtgt 45216197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 11814358 - 11814438
Alignment:
Q  324 cttccgcacatagtagattcaagagttaaagatgtgtga-gaaatgttgatcaacgaggaatcatagacatcaaagttgat 403  Q
    ||||| |||| | |||||||||||||||||||||||| |  |||| |||||||||||||  | |||||||| || ||||||    
T  11814358 cttccacacacaatagattcaagagttaaagatgtgtaacaaaatattgatcaacgaggggttatagacattaatgttgat 11814438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 11816795 - 11816867
Alignment:
Q  225 ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactca 297  Q
    ||||| |||||||||||| ||| | ||||||||||| |||||  |||||| | |||| ||||| |||||||||    
T  11816795 ctttatttcgacactcctaagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactca 11816867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 13097640 - 13097587
Alignment:
Q  324 cttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaac 377  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  13097640 cttccacacacagtagattcaagagttaaagatgtgtgagaaatgttgatcaac 13097587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 337 - 446
Target Start/End: Original strand, 18393524 - 18393633
Alignment:
Q  337 tagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttccaatagtagatgg 436  Q
    ||||||||||||||||||||||| ||||||||||||||||  | |  | |||||||| ||||||||| ||| ||  ||||||||||   |||||||||||    
T  18393524 tagattcaagagttaaagatgtgcgagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaattttttgatagtagatgg 18393623  T
Q  437 ataaagaaag 446  Q
    ||||| ||||    
T  18393624 ataaataaag 18393633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 446
Target Start/End: Complemental strand, 27401997 - 27401903
Alignment:
Q  352 aagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttccaatagtagatggataaagaaag 446  Q
    ||||||||||| ||||||||||||||||||  | |||||||| ||||||||| ||| ||  |||   | || |||||||||||||||||| ||||    
T  27401997 aagatgtgtgaaaaatgttgatcaacgaggggttatagacattaaagttgattacaacgtttttttttctttcaatagtagatggataaataaag 27401903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 379
Target Start/End: Original strand, 2889701 - 2889756
Alignment:
Q  324 cttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacga 379  Q
    ||||| ||||||||| |||||||||||||||| ||| |  ||||||||||||||||    
T  2889701 cttccacacatagtatattcaagagttaaagacgtgcggaaaatgttgatcaacga 2889756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 3160020 - 3159971
Alignment:
Q  330 cacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacga 379  Q
    ||||||||| |||||||||||||||| ||| |  ||||||||||||||||    
T  3160020 cacatagtatattcaagagttaaagacgtgcggaaaatgttgatcaacga 3159971  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 15131819 - 15131900
Alignment:
Q  225 ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatat 306  Q
    ||||||||||||||||||  |||| ||||| ||||| |||||| |||| | | |||  |||||  |||||||||||||||||    
T  15131819 ctttacttcgacactcctacgaccggtgtccgacacctatataacactcatatgagcagtgtcgaacaactcagacaaatat 15131900  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 625
Target Start/End: Complemental strand, 27401779 - 27401702
Alignment:
Q  545 agcggtgttggtgtcctatggttttttacattattggtgtcgacgtgtccgtgtgtcagtgtcgtatcaagtgtccgtgtc 625  Q
    |||||| |||| |||||||| ||||||||||||  ||||| | |||||||||||  ||||||| ||||| |||||||||||    
T  27401779 agcggtattggcgtcctatg-ttttttacattagcggtgttggcgtgtccgtgt--cagtgtcctatcaggtgtccgtgtc 27401702  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 225 - 309
Target Start/End: Complemental strand, 13097741 - 13097657
Alignment:
Q  225 ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatatttg 309  Q
    |||||||  ||||||||||||||| ||||  ||||| |||||| |||||| | || ||||||| ||||| ||| |||||| ||||    
T  13097741 ctttactgtgacactccttagaccggtgtgcgacacctatataacacttatatgaagcgtgtcggacaattcaaacaaatgtttg 13097657  T

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Target: scaffold1723 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 330 - 446
Target Start/End: Original strand, 304 - 419
Alignment:
Q  330 cacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttccaatag 429  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||| | |  | || |||||||||||||||  || || |||| |||||| | ||||    
T  304 cacacagtagattcaagggttaaagatgtgtgagaaatgttgatcaacaatgggttatggacatcaaagttgattccaacgtatttcaatttt-cgatag 402  T
Q  430 tagatggataaagaaag 446  Q
     ||||||||||| ||||    
T  403 cagatggataaataaag 419  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 324 - 435
Target Start/End: Original strand, 42718559 - 42718669
Alignment:
Q  324 cttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttc 423  Q
    ||||| |||| | |||||| |||||||||| | |||||||||||||||| |||||||| || ||| |||| |||||||||  || |||||||||| |||     
T  42718559 cttccacacacaatagatttaagagttaaa-acgtgtgagaaatgttgaacaacgagggattataaacattaaagttgattccaacgcatttaaaatttt 42718657  T
Q  424 caatagtagatg 435  Q
    ||||||||||||    
T  42718658 caatagtagatg 42718669  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 338 - 446
Target Start/End: Complemental strand, 2602275 - 2602169
Alignment:
Q  338 agattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttccaatagtagatgga 437  Q
    ||||||||||||||||  | |||||||||||||||||||| |||  | ||| |||| ||||||||| ||| | |||||||||||| | |||||| |||||    
T  2602275 agattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatgga 2602178  T
Q  438 taaagaaag 446  Q
    |||| ||||    
T  2602177 taaataaag 2602169  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 17261796 - 17261739
Alignment:
Q  324 cttccgcacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgagg 381  Q
    ||||| |||| | |||||| ||||||||||||||||||||||||||||||||| ||||    
T  17261796 cttccacacacattagatttaagagttaaagatgtgtgagaaatgttgatcaatgagg 17261739  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 6812686 - 6812636
Alignment:
Q  331 acatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgagg 381  Q
    |||| ||||||||||||||||||||||| | | || |||||||||||||||    
T  6812686 acatggtagattcaagagttaaagatgtttaaaaattgttgatcaacgagg 6812636  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 12844213 - 12844132
Alignment:
Q  225 ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatat 306  Q
    |||||||||||||||||| ||| |  |||||||||| |||||| |||| | | |||  ||||||||||||||| ||| ||||    
T  12844213 ctttacttcgacactcctaagatcgatgtctgacacttatataacactcatacgagctgtgtcagacaactcacacagatat 12844132  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 32595038 - 32594961
Alignment:
Q  229 acttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacaaatat 306  Q
    ||||| || |||||| ||||||||| |||||| |||||| |||||| | ||||||||| ||| |||||||||||||||    
T  32595038 acttcaacgctccttggaccagtgtttgacacttatataacacttatatgaggcgtgttagataactcagacaaatat 32594961  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 446
Target Start/End: Complemental strand, 32594017 - 32593906
Alignment:
Q  330 cacatagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaggaatcatagacatcaaagttgatgacagcgcatttaaattttccaatag 429  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||| ||||| |  || |||| ||| ||||| ||| | ||||||||||||   | ||    
T  32594017 cacacagtagattcaagagttaaaga--tgtgagaaatgttgatcaatgaggagt--taaacattaaa-ttgattacaacacatttaaattttttgagag 32593923  T
Q  430 tagatggataaagaaag 446  Q
    |||||||||||| ||||    
T  32593922 tagatggataaataaag 32593906  T

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