View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_13 (Length: 636)
Name: NF0796_low_13
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_13 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 102 - 636
Target Start/End: Complemental strand, 39584457 - 39583923
Alignment:
| Q |
102 |
acaaacataggacaagatcacttagtagaagagtcagacatttcaaaactcccctacctacaaaatataatccacgagacatttcgattgcatcctgcat |
201 |
Q |
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| T |
39584457 |
acaaacataggacaagatcacttagtagaagagtcagacatttcaaaactcccctacctacaaaatataatccacgagacatttcgattgcatcctgcat |
39584358 |
T |
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| Q |
202 |
ttgcattgttggctcctcatttttcttcacaagattgcaccataggaggttataatgtcccaaaaaacactattttattggttaatgcttgggcaattca |
301 |
Q |
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| T |
39584357 |
ttgcattgttggctcctcatttttcttcacaagattgcaccataggaggttatattgtcccaaaaaacactattttattggttaatgcttgggcaattca |
39584258 |
T |
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| Q |
302 |
cagagattctcaactatggagtgacccaacacaattcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaaga |
401 |
Q |
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| T |
39584257 |
cagagattctcaactatggagtgacccaacacaattcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaaga |
39584158 |
T |
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| Q |
402 |
agggcttgtcctggagcaaacttagggcaacgtacagttagtttaactttggcattacttatacaatgttttgattggaaaagaataaatgaggaagaaa |
501 |
Q |
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| T |
39584157 |
agggcttgtcctggagcaaacttagggcaacgtacagttagtttaactttggcattacttatccaatgttttgattggaaaagaataagtgaggaagaaa |
39584058 |
T |
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| Q |
502 |
ttgatatgactgaaggaaaaggagccactactccgaagttaattcccttggaggccatgtgtaaagctcgttcaaatgtcatcaacaaggtttatctaaa |
601 |
Q |
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| T |
39584057 |
ttgatatgactgaaggaaaaggagccactactccgaagctaattcccttggaggccatgtgtaaagctcgttcaaatgtcatcaacaaggtttatctaaa |
39583958 |
T |
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| Q |
602 |
agttgatgaaaacatgtaagagaaagaaattctgt |
636 |
Q |
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| T |
39583957 |
agttgatgaaaacatgtaagagaaggaaattctgt |
39583923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 468 - 617
Target Start/End: Complemental strand, 39572713 - 39572566
Alignment:
| Q |
468 |
tgttttgattggaaaagaataaatgaggaagaaattgatatgactgaaggaaaaggagccactactccgaagttaattcccttggaggccatgtgtaaag |
567 |
Q |
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| T |
39572713 |
tgtttcgattggaaaataataagtgagaaagaaattgat--gagttaaggaaaaggagtcactactccaaagccaattcccttagaggccatgtgtatag |
39572616 |
T |
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| Q |
568 |
ctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatg |
617 |
Q |
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| T |
39572615 |
ctcgctcaaatgtcatcaacaaggtttttctaaaagccggtgaaaacatg |
39572566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 12151563 - 12151489
Alignment:
| Q |
342 |
ccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctgga |
416 |
Q |
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| T |
12151563 |
ccagagagatttgaaaaagaaggtgaggtaaataagttaattgcatttggttttggaagaagggcttgtcctgga |
12151489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 336 - 417
Target Start/End: Complemental strand, 38974843 - 38974762
Alignment:
| Q |
336 |
ttcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggag |
417 |
Q |
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| T |
38974843 |
ttcaagcctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccaggag |
38974762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 38931689 - 38931612
Alignment:
| Q |
339 |
aagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctgga |
416 |
Q |
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| T |
38931689 |
aagccagagagatttgaaaaagaaggggaagcaaacaagttaattgcatttggttttggaaggaggggttgccctgga |
38931612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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