View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_16 (Length: 568)
Name: NF0796_low_16
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 31 - 476
Target Start/End: Original strand, 13113349 - 13113828
Alignment:
| Q |
31 |
aaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacatttgtggtccagcctgcattgaaacatggaaactta |
130 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13113349 |
aaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacattcgtggtccagcctgcattgaaacatggaaactta |
13113448 |
T |
|
| Q |
131 |
cacactataatgtgtcata----------------------aaatttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatggtgat |
208 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13113449 |
cacactataatatgtcataaaaaaagtcttatcaagcaataaaatttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatggcgat |
13113548 |
T |
|
| Q |
209 |
tcgggctggaaaattccgttgttaatccatctttcaggacaaaattcatcggcgtcatccccccaaatggaagacattcgacccatagcataggccaagt |
308 |
Q |
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||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13113549 |
tcgggttggaaaattccgtctgtaatccatctttcaggacgaaattcatcggcgtcttccccccaaatggaagacattcgacccatagcataggccaagt |
13113648 |
T |
|
| Q |
309 |
agtacactccatcgcccttttccactttgtgtccatcgggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataacaagaca |
408 |
Q |
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| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13113649 |
aatacactccatcgcccttttccagtttgtgtccatcgggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataacaagaca |
13113748 |
T |
|
| Q |
409 |
------------caaaatctaacatataatgttgtttataggtgcattttaacatggaaatatttagattacagtcacat |
476 |
Q |
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| T |
13113749 |
caaaaatatcatcaaaatctaacatgtaatgttgtttataggtgcattttaacatggaaatatttagattacagtcacat |
13113828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 147 - 476
Target Start/End: Complemental strand, 18671135 - 18670794
Alignment:
| Q |
147 |
ataaaatttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatggtgattcgggctggaaaattccgttgttaatccatctttcagg |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18671135 |
ataaaatttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatggtgattcaggctggaaaattccgttgttaatccatctttcagg |
18671036 |
T |
|
| Q |
247 |
acaaaattcatcggcgtcatccccccaaatggaagacattcgacccatagcataggccaagtagtacactccatcgcccttttccactttgtgtccatcg |
346 |
Q |
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||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18671035 |
acaaaattcatcgacgtcttccccccagatggaagacattcgacccatagcataggccaagtagtacactccatcgcccttttccactttgtgtccatcg |
18670936 |
T |
|
| Q |
347 |
ggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataacaagacac------------aaaatctaacatataatgttgttta |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
18670935 |
ggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataacaagacacaaaaatatcatcaaaatctaacatgtaatgttgttta |
18670836 |
T |
|
| Q |
435 |
taggtgcattttaacatggaaatatttagattacagtcacat |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
18670835 |
taggtgcattttaacatggaaatatttagattacagtcacat |
18670794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 31 - 400
Target Start/End: Original strand, 13102508 - 13102898
Alignment:
| Q |
31 |
aaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacatttgtggtccagcctgcattgaaacatggaaactta |
130 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13102508 |
aaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacatacgtggtccagcctgcattgaaacatggaaactta |
13102607 |
T |
|
| Q |
131 |
cacactataatgtgtcataaa---------------------atttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatggtgatt |
209 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13102608 |
cacactataatgtgtcataaaagagtcttatcaagcattaaaatttgaaggaacataaatgtacaaattacatggaatgctacgaatttgaatggtgatt |
13102707 |
T |
|
| Q |
210 |
cgggctggaaaattccgttgttaatccatctttcaggacaaaattcatcggcgtcatccccccaaatggaagacattcgacccatagcataggccaagta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13102708 |
cgggctggaaaattccgttgttaatccatctttctggacgaaattcattggcgtcttccccccatatggaagacattcgacccatagcataggccaagta |
13102807 |
T |
|
| Q |
310 |
gtacactccatcgcccttttccactttgtgtccatcgggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcata |
400 |
Q |
| |
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|| |||||| || |||||||||| |||||||||||| ||||||| ||| || ||||| |||||||||||||||||||||||| ||||||| |
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| T |
13102808 |
gttcactccgtctcccttttccagtttgtgtccatcaggaagaatatcaggtgcatctgcagttcttccatccttgaaaaatgatatcata |
13102898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 149 - 400
Target Start/End: Original strand, 13095317 - 13095568
Alignment:
| Q |
149 |
aaaatttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatggtgattcgggctggaaaattccgttgttaatccatctttcaggac |
248 |
Q |
| |
|
||||||| |||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
13095317 |
aaaatttaaaggaaaataaatgtacaaattacatgaaatgctacaaatttgaatggtgattcgggttggaaaattccgtctgtaatccatctttcaggac |
13095416 |
T |
|
| Q |
249 |
aaaattcatcggcgtcatccccccaaatggaagacattcgacccatagcataggccaagtagtacactccatcgcccttttccactttgtgtccatcggg |
348 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| | || ||||||| || |||||| ||||| || |
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| T |
13095417 |
gaaattcttcggcgtcttccccccaaatggaagacattcgacccatagcataggccatgtagttcactgcgtctcccttttgcagtttgtggccatcagg |
13095516 |
T |
|
| Q |
349 |
aagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcata |
400 |
Q |
| |
|
||||| ||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13095517 |
aagaatatcaggtgcatccgcagttcttccatccttgaaaaatagtatcata |
13095568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 18671275 - 18671154
Alignment:
| Q |
31 |
aaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacatttgtggtccagcctgcattgaaacatggaaactta |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18671275 |
aaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacattcgtggtccagcctgcattgaaacatggaaactta |
18671176 |
T |
|
| Q |
131 |
cacactataatgtgtcataaaa |
152 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
18671175 |
cacactataatgtgtcataaaa |
18671154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 475 - 558
Target Start/End: Original strand, 13113971 - 13114054
Alignment:
| Q |
475 |
ataaaaataattcaagatggtttcgaagaaattggtagaaggtacatacgatagggagtacagggtacaatctcaatgtctctg |
558 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
13113971 |
ataaaaataattcaagatggttttgaagaaattggtagaaggtacatacaacagggagtacagggtacaatctcaatgtctctg |
13114054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 13095166 - 13095266
Alignment:
| Q |
31 |
aaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacatttgtggtccagcctgcattgaaacatggaaactta |
130 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || |||||| | ||||||| |
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|
| T |
13095166 |
aaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacatacgaggtccagcctacaaagaaacacgaaaactta |
13095265 |
T |
|
| Q |
131 |
c |
131 |
Q |
| |
|
| |
|
|
| T |
13095266 |
c |
13095266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 477 - 558
Target Start/End: Original strand, 13102999 - 13103080
Alignment:
| Q |
477 |
aaaaataattcaagatggtttcgaagaaattggtagaaggtacatacgatagggagtacagggtacaatctcaatgtctctg |
558 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||||||| |
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|
| T |
13102999 |
aaaaataacttaagatggtttcgaagaaattggtagaaggtacatacaataggaacaacaggatacaatctcaatgtctctg |
13103080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 13077683 - 13077732
Alignment:
| Q |
263 |
tcatccccccaaatggaagacattcgacccatagcataggccaagtagta |
312 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
13077683 |
tcatccccccaaatgtaaggcattcttcccatagcataggacaagtagta |
13077732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 13077072 - 13077132
Alignment:
| Q |
52 |
actattttcatttgtctgtatgcaaagtccttccctaagcacatttgtggtccagcctgca |
112 |
Q |
| |
|
|||||||||||||| || || ||||||||||| |||||||| || |||| |||||||||| |
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|
| T |
13077072 |
actattttcatttgcctataagcaaagtcctttcctaagcatatacgtggaccagcctgca |
13077132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 13084076 - 13084136
Alignment:
| Q |
52 |
actattttcatttgtctgtatgcaaagtccttccctaagcacatttgtggtccagcctgca |
112 |
Q |
| |
|
|||||||||||||| || || ||||||||||| |||||||| || |||| |||||||||| |
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|
| T |
13084076 |
actattttcatttgcctataagcaaagtcctttcctaagcatatacgtggaccagcctgca |
13084136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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