View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_17 (Length: 530)
Name: NF0796_low_17
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 58 - 501
Target Start/End: Complemental strand, 33556575 - 33556132
Alignment:
| Q |
58 |
aaacaaaggcatcatgactctagacatttcacaattaaattttaacacttcatcctaaccctaaaaatttgagattcttaaagcttaatatcaaaagttg |
157 |
Q |
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| T |
33556575 |
aaacaaaggcatcatgactctagacatttcacaattaaattttaacacttcatcctaaccctaaaaatttgagattcttaaagcttaatatcaaaagttg |
33556476 |
T |
|
| Q |
158 |
caaagtgttagtatattctcttcatcttcaattcatcaaataatctatgatcaagattttaaggacatatttttgtttcatgtgagcaacaattcataac |
257 |
Q |
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| T |
33556475 |
caaagtgttagtatattctcttcatcttcaattcatcaaataatctatgatcaagattttaaggacatatttttgtttcatgtgagcaacaattcataac |
33556376 |
T |
|
| Q |
258 |
agattggggaaacatgctcccgcgacgtcaatgactgtggtacggggctgcagtgcctggaatgcaactcacaaagccggtgtacacgagtccgaacttc |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33556375 |
agattggggaaacatgctcccgcgacgtcaatgactgtggtacggggctgcagtgcctggaatgcaactcacaaagccggtgtacacgagtccgaacttc |
33556276 |
T |
|
| Q |
358 |
aagtcctatttcaaaagtccttagtcctcatcatacatttttcatttttgttctatagctgctaaaataaactttgtaaaagattaattattataaatga |
457 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33556275 |
aagtcctatttcaaaagtccttagtcctcatcatacatttttcatttatgttctatagctgctaaaataaactttgtaaaagattaattattataaatga |
33556176 |
T |
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| Q |
458 |
tttgcatgtgtaggtgatggagcttccatttaaccattactcat |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33556175 |
tttgcatgtgtaggtgatggagcttccatttaaccattactcat |
33556132 |
T |
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