View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_18 (Length: 529)
Name: NF0796_low_18
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 213 - 518
Target Start/End: Original strand, 1657210 - 1657513
Alignment:
| Q |
213 |
gtataataacttttcattctgattaagaacgtgaagatgacttactccnnnnnnnnnnnnnnnnnnncctcccttttggcaagtgcttaaggtgtctaaa |
312 |
Q |
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| T |
1657210 |
gtataataacttttcattctgattaagaacgtgaagatgacttactcctttttctttacctttttttcctcccttttggcaagtgcttaaggtatctaaa |
1657309 |
T |
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| Q |
313 |
gagtttaggccttttgggtcttcaatgggaccaattattgagttaatagtgatacatcgtttatttttacaactctaaaaatcatattctttactannnn |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1657310 |
gagtttaggccttttgggtcttcaatgggaccaattattgagttaatagtgatacatcgtttatttttacaactctaaaaatcatattctttactatttt |
1657409 |
T |
|
| Q |
413 |
nnncagtcaaaacaagaatcaaccttgtatgtttgcactcattataaaacacactatatttacagactaacgtgggttatttatgtggtttggtgataca |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1657410 |
tttcagtcaaaacaagaatcaaccttgtatgtttgcactcattataaaacacac--tatttacagactaacgtgggttatttatgtggtttggtgataca |
1657507 |
T |
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| Q |
513 |
gttcat |
518 |
Q |
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|||||| |
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| T |
1657508 |
gttcat |
1657513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 1657072 - 1657171
Alignment:
| Q |
97 |
atagtaaatggatttgtacaatgaagatttatgaagtcaaacttagaaataccaaccaaaaccaaactaagatgtattgattgcacgattactcttttcc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
1657072 |
atagtaaatggatttgtacaatgaagatttatgaagtcaaacttagaaataccaaccaaaaccaaactaagatttattgattgcacgactactcttttcc |
1657171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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