View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_22 (Length: 456)
Name: NF0796_low_22
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 8258724 - 8258446
Alignment:
| Q |
1 |
acataaacaaaaaacccacttcaaagtgcaaattaaatcactttttt-atggctttgatttcatccattttaagttgctttggccattcttcaaactcat |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8258724 |
acataaacaaaaaacccacttcaaagtgcaaattaaatcactttttttatggctttgatttcatccattttaagttgctttggccattcttcaaactcat |
8258625 |
T |
|
| Q |
100 |
catctcaagtttctgatttagatgaaaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaaggaaaaatcaaaggaagctccaattgt |
199 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8258624 |
catctcaagtttctgattatgatgaaaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaaggaaaaatcaaagggagctccaattgt |
8258525 |
T |
|
| Q |
200 |
agtatatcatttccctgctaactcttatctctcacgtttgtagtcatccacttcttatgaagagactagagcaatcgac |
278 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8258524 |
agtatatcatttccctactaactcttatctctcacgtttgtagtcatccatttcttatgaagagactagagcaatcgac |
8258446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 8265797 - 8265523
Alignment:
| Q |
1 |
acataaacaaaaaacccacttcaaagtgcaaattaaatcactttttt-atggctttgatttcatccattttaagttgctttggccattcttcaaactcat |
99 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| | |||||| |
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| T |
8265797 |
acataaacaagaaacccacttcaaagtgcaaattaaatcactttttttatggctttgatttcatccttcttaagttgctttggccattctttagactcat |
8265698 |
T |
|
| Q |
100 |
catctcaagtttctgatttagatgaaaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaaggaaaaatcaaaggaagctccaattgt |
199 |
Q |
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| T |
8265697 |
cgtctcaagtttctgattatgatgaaaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaaggaaaaatcaaagggagctccaattgt |
8265598 |
T |
|
| Q |
200 |
agtatatcatttccctgctaactcttatctctcacgtttgtagtcatccacttcttatgaagagactagagcaatcgac |
278 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| |
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| T |
8265597 |
agtatatcatttccctgctaactcttatctctctcgtttgtagtcatcca----atatgaagaaactagagcaatcgac |
8265523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 8260830 - 8260585
Alignment:
| Q |
1 |
acataaacaaaaaacccacttcaaagtgcaaattaaatcacttttttatggctttgatttcatccattttaagttgctttggccattcttcaaactcatc |
100 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| | ||||||| |
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| T |
8260830 |
acataaacagaaaaccctcttcaaagtgcaaattaaatcactttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatc |
8260731 |
T |
|
| Q |
101 |
atctcaagtttctgatttagatgaaaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaaggaaaaatcaaaggaagctccaattgta |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| |
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| T |
8260730 |
atctcaagtttctgattatgatgaaaaatcatctaaattgaaatcttcatctttagagaaacaaaagagcaaagaaaaatcaaagagagctccaattgta |
8260631 |
T |
|
| Q |
201 |
gtatatcatttccctgctaactcttatctctcacgtttgtagtcat |
246 |
Q |
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|| | | ||||||||| ||||||||||||||||||||||||||||| |
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| T |
8260630 |
gtttcttatttccctgttaactcttatctctcacgtttgtagtcat |
8260585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 8352964 - 8352761
Alignment:
| Q |
25 |
agtgcaaattaaatcacttttttatggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgatttagatga |
124 |
Q |
| |
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|||||||| |||||||||||| ||||||||||||||||| |||| | ||||||||| | |||||| |||||||| |||||||||| ||||| ||||| |
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| T |
8352964 |
agtgcaaaccaaatcactttttgatggctttgatttcatcatttttcaattgctttggtccttcttcgaactcatcttctcaagtttatgattatgatga |
8352865 |
T |
|
| Q |
125 |
aaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaaggaaaaatcaaaggaagctccaattgtagtatatcatttccctgctaactct |
224 |
Q |
| |
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|||||||||| ||| |||||||||||||| ||| ||| |||||| ||||||||||| || | |||| |||||||||| | | ||||||||| ||||| | |
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| T |
8352864 |
aaaatcatctcaatcgaaatcttcatcttcagaaaaattaaagagaaaggaaaaatctaatggagcttcaattgtagtttcttatttccctgttaactat |
8352765 |
T |
|
| Q |
225 |
tatc |
228 |
Q |
| |
|
|||| |
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|
| T |
8352764 |
tatc |
8352761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 340 - 428
Target Start/End: Complemental strand, 8258384 - 8258298
Alignment:
| Q |
340 |
cctttatttgtagtttcttgttttaacaagaaaaattacatgagttatataaataattaatattgtactctcatgatattatatgatgt |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8258384 |
cctttatttgtagtttcttgttttaacaagaaaaattacatgagttatataaataattaatattgta--ctcatgatattatatgatgt |
8258298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 8356482 - 8356354
Alignment:
| Q |
74 |
ttgctttggccattcttcaaactcatcatctcaagtttctgatttagatgaaaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaag |
173 |
Q |
| |
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||||||||| | ||||||||||||||||||||||||||||||| | | |||| |||||| || ||||||||||| ||| |||||||| |||||| ||| |
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| T |
8356482 |
ttgctttggtctctcttcaaactcatcatctcaagtttctgattatgctcaaaattcatctcaaatgaaatcttcaacttcagagaaaccaaagagcaag |
8356383 |
T |
|
| Q |
174 |
gaaaaatcaaaggaagctccaattgtagt |
202 |
Q |
| |
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|||||||||| || ||||||||||||||| |
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|
| T |
8356382 |
gaaaaatcaatgggagctccaattgtagt |
8356354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 342 - 427
Target Start/End: Complemental strand, 8265459 - 8265371
Alignment:
| Q |
342 |
tttatttgtagtttcttgttttaacaagaaaaattacatgagttatataaataattaata---ttgtactctcatgatattatatgatg |
427 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| |
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| T |
8265459 |
tttatttgtagtttcttgttttaacgagaaaaattacatgagttgtataaatagttaatattgttgtactatcatgatattatatgatg |
8265371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 8360642 - 8360527
Alignment:
| Q |
87 |
tcttcaaactcatcatctcaagtttctgatttagatgaaaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaaggaaaaatcaaagg |
186 |
Q |
| |
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|||||||||| |||||||||||||||||||| | |||||| |||||| || ||||||||||| ||| |||||||| ||||| ||||||||||||| | |
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| T |
8360642 |
tcttcaaacttatcatctcaagtttctgattatgttgaaaattcatctcaaatgaaatcttcaacttcagagaaaccaaagatcaaggaaaaatcaatag |
8360543 |
T |
|
| Q |
187 |
aagctccaattgtagt |
202 |
Q |
| |
|
||||||||||||||| |
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|
| T |
8360542 |
gagctccaattgtagt |
8360527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 8350220 - 8350129
Alignment:
| Q |
25 |
agtgcaaattaaatcacttttttatggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgat |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| | || | ||| ||||| | ||||||||||||||| ||||||||||||||| |
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| T |
8350220 |
agtgcaaattaaatcactttttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgat |
8350129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 8350099 - 8350017
Alignment:
| Q |
164 |
aaagagtaaggaaaaatcaaaggaagctccaattgtagtatatcatttccctgctaactcttatctctcacgtttgtagtcat |
246 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| |||| | | ||||||||| ||||| ||||| |||||| |||||||||| |
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|
| T |
8350099 |
aaagaggaaggaaaaatcaaagggagctccaattatagtttcttatttccctgttaactattatccctcacgcttgtagtcat |
8350017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 8252954 - 8252867
Alignment:
| Q |
155 |
agagaaacaaaagagtaaggaaaaatcaaaggaagctccaattgtagtatatcatttccctgctaactcttatctctcacgtttgtag |
242 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| ||||||||||| ||| | | ||||| ||| |||| || ||||||||| |||||| |
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|
| T |
8252954 |
agagaaaccaaagaggaaggaaaaatcaaagggagctccaattgcagtttcttatttctctgttaacaattgtctctcacgcttgtag |
8252867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 8253043 - 8252975
Alignment:
| Q |
48 |
atggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgat |
116 |
Q |
| |
|
||||||||||||||||| | || | ||| ||||| | ||||||||||||||| ||||||||||||||| |
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| T |
8253043 |
atggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgat |
8252975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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