View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_24 (Length: 449)
Name: NF0796_low_24
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 18878427 - 18878217
Alignment:
| Q |
29 |
agactttttgtgctgtttcttttttcagatccaccaaatccaacttccctcaaaaagcaagtaacacgcacaaacatgtaatgtaataacaagacaaact |
128 |
Q |
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| T |
18878427 |
agactttttgtgctgtttcttttttcagatccaccaaatccaacttcccccaaaaagcaagtaacacgcacaaacatgtaat-----aacaaaacaaact |
18878333 |
T |
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| Q |
129 |
caaaggttcatcactttcataatcttcttacacaaacaaaacataacaaaaatagatagattatagtacaacattgtttctctctatttttggaccaacc |
228 |
Q |
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| T |
18878332 |
caaaggttcatcactttcataatcttcttacacaaacaaaacaaaacaaaaatagatagattatagtacaacattgtttctctctatttttggaccaacc |
18878233 |
T |
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| Q |
229 |
aacaatcacaaacttc |
244 |
Q |
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|||||||||||||||| |
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| T |
18878232 |
aacaatcacaaacttc |
18878217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 274 - 439
Target Start/End: Complemental strand, 18878187 - 18878021
Alignment:
| Q |
274 |
gtcaaaccaagtt-gtatgttcatcgttggaaatggaccaaccaccgtggaaggaagaagaagcggcggttggcggtggtgataggggaccaccacagcg |
372 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18878187 |
gtcaaaccaagtttgtatgttcatcgttggaaatggaccaaccaccgtggaaggaagaagaagcggcggttggcggtggtgatgggggaccaccacagcg |
18878088 |
T |
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| Q |
373 |
gcccaccttaactctgccgccacgtacggatgcacttttcagcggtggttttagccctggtcctatg |
439 |
Q |
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| T |
18878087 |
gcccaccttaactctgccgccacgtacggatgtacttttcagcggtggttttagccctggtcctatg |
18878021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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