View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_31 (Length: 404)
Name: NF0796_low_31
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 259 - 375
Target Start/End: Original strand, 1565178 - 1565294
Alignment:
| Q |
259 |
tgagcggcatctcggcttctttttcatcatattcacgaatacgacgccataatttcatgtcatgttgtattctcggattgttgcgtgtgctctcatgcac |
358 |
Q |
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| T |
1565178 |
tgagcggcatctcggctgctttttcatcatattcacgaatacgacgccataatttcatgtcatgttatattctcggattgttgtgtgtgttctcatgcac |
1565277 |
T |
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| Q |
359 |
aactaaaaccatgttac |
375 |
Q |
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| T |
1565278 |
aactaaaaccatgttac |
1565294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 1565037 - 1565180
Alignment:
| Q |
15 |
gagaaccaaaccgtaccctgaagcgagtgaataggttcaacnnnnnnnnntaaccgctggtttaggagacaaataaagttttttatgcaatttctgtgtc |
114 |
Q |
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| T |
1565037 |
gagaaccaaaccgtatcctgaagcgagggaataggttcaacaaaaaaaaaaaaccactggtttaggaaacaaataattttttttatgcaatttccgtgtc |
1565136 |
T |
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| Q |
115 |
gagtcaccaaaaccacaggcattccaatagaagacattcattga |
158 |
Q |
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| T |
1565137 |
gagtcaccaaaaccacgggcattccaatagaagacattcattga |
1565180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 28783875 - 28783921
Alignment:
| Q |
137 |
tccaatagaagacattcattgaacagttagagaaggaaccccctaga |
183 |
Q |
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| T |
28783875 |
tccaatagaaaacattcattgatcagttggagaaggatccccctaga |
28783921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 36606723 - 36606666
Alignment:
| Q |
284 |
atcatattcacgaatacgacgccataatttcatgtcatgttgtattctcggattgttg |
341 |
Q |
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| T |
36606723 |
atcatattcacaaatacggcgccataatttcatatcatgttgaattctcgaattgttg |
36606666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 35141936 - 35141878
Alignment:
| Q |
279 |
ttttcatcatattcacgaatacgacgccataatttcatgtcatgttgtattctcggatt |
337 |
Q |
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|||| |||||| ||||||||||| |||||||| | |||||| ||||| ||||||||||| |
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| T |
35141936 |
tttttatcataatcacgaatacggcgccataactccatgtcttgttgaattctcggatt |
35141878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 33536902 - 33536842
Alignment:
| Q |
130 |
caggcattccaatagaagacattcattgaacagttagagaaggaaccccctagaacgggtt |
190 |
Q |
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| T |
33536902 |
caggcattccaatcgaaaacattcattgatcagttggagaaggatccccccagatcgggtt |
33536842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 12237441 - 12237499
Alignment:
| Q |
279 |
ttttcatcatattcacgaatacgacgccataatttcatgtcatgttgtattctcggatt |
337 |
Q |
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|||| |||||||||||||||||| |||||||| |||||||| | || ||||||||||| |
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| T |
12237441 |
ttttgatcatattcacgaatacggcgccataacttcatgtctagctgaattctcggatt |
12237499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 18695176 - 18695118
Alignment:
| Q |
279 |
ttttcatcatattcacgaatacgacgccataatttcatgtcatgttgtattctcggatt |
337 |
Q |
| |
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|||| |||||||||||||||| | |||||||||| |||||| || || ||||||||||| |
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| T |
18695176 |
ttttaatcatattcacgaatatggcgccataattccatgtcgtgctgaattctcggatt |
18695118 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 6899637 - 6899690
Alignment:
| Q |
321 |
tgttgtattctcggattgttgcgtgtgctctcatgcacaactaaaaccatgtta |
374 |
Q |
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||||||||||||| | || || ||||| ||| |||||||||||||||||||||| |
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| T |
6899637 |
tgttgtattctcgaactgatgtgtgtgttcttatgcacaactaaaaccatgtta |
6899690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 27505882 - 27505811
Alignment:
| Q |
132 |
ggcattccaatagaagacattcattgaacagttagagaaggaaccccctagaacgggtttggtacgacgactt |
204 |
Q |
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| T |
27505882 |
ggcattccaatagaaaatatacattgatcagttggagaagg-accccctagatcgggttctatacgacgactt |
27505811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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