View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_32 (Length: 403)
Name: NF0796_low_32
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 214 - 375
Target Start/End: Original strand, 51615047 - 51615208
Alignment:
| Q |
214 |
acttgaccacaaacctcttctctctcctacgccgttcattcttggaaaacgtattcgcactgatgatgattcttcttcttcctctgctaaagatgatgct |
313 |
Q |
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| T |
51615047 |
acttgaccacaaacctcttctctctcctacgccgttcattcttggaaaacgtattcgcactgatgatgattcttcttcttcctctgctaaagatgatgct |
51615146 |
T |
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| Q |
314 |
ctttctgttggttctctttctacaccggcggctctttgggctttacctgcgcggcctgattt |
375 |
Q |
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| T |
51615147 |
ctttctgttggttctctttctacaccggcggctctttgggctttacctgcgcggcctgattt |
51615208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 51614841 - 51614981
Alignment:
| Q |
8 |
ccaataatatgcgccgcacgtgtcttccagctcacacgcgaattaggtcacaaatccgacggtcaaaccatcgaatggctcctccgtcaagctgaaccct |
107 |
Q |
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| T |
51614841 |
ccaatcatatgcgccgcacgtgtcttccagctcacacgcgaattaggtcacaaatccgacggtcaaaccatcgaatggctcctccgtcaagctgaaccct |
51614940 |
T |
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| Q |
108 |
ccatcatcgccgccaccggtaccggcacaactccggcgagt |
148 |
Q |
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| T |
51614941 |
ccatcatcgccgccaccggtaccggcacaactccggcgagt |
51614981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 14250454 - 14250324
Alignment:
| Q |
11 |
ataatatgcgccgcacgtgtcttccagctcacacgcgaattaggtcacaaatccgacggtcaaaccatcgaatggctcctccgtcaagctgaaccctcca |
110 |
Q |
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| T |
14250454 |
ataatttgcgccgcacgtgttttccagttaacacgtgagcttggtcataaatccgacggtcaaactattgaatggcttctccgtcaagctgaaccgtcga |
14250355 |
T |
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| Q |
111 |
tcatcgccgccaccggtaccggcacaactcc |
141 |
Q |
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| T |
14250354 |
tcatcgccgccaccggtaccggaactactcc |
14250324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 28042132 - 28042234
Alignment:
| Q |
30 |
tcttccagctcacacgcgaattaggtcacaaatccgacggtcaaaccatcgaatggctcctccgtcaagctgaaccctccatcatcgccgccaccggtac |
129 |
Q |
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|||||||||||||||| || |||||||| ||||||||| |||| ||||| ||||| || ||||| ||||| || || ||||||||||| || ||||| |
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| T |
28042132 |
tcttccagctcacacgtgagctaggtcaccgttccgacggtgaaacaatcgagtggcttcttcgtcatgctgagccgtcgatcatcgccgctacaggtac |
28042231 |
T |
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| Q |
130 |
cgg |
132 |
Q |
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||| |
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| T |
28042232 |
cgg |
28042234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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