View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_34 (Length: 399)
Name: NF0796_low_34
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 29 - 387
Target Start/End: Original strand, 52477964 - 52478313
Alignment:
| Q |
29 |
aatattcacgtgagatatatatggtatagaagaaagtcatgatatatatggccgaccagcactaaattaaaatttgaaacatgaagttccactttgaaat |
128 |
Q |
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| T |
52477964 |
aatattcacgtgagatat----ggtatagaagaaagtcatgatatatatggccgaccagcactaaattaaaatttgaaacatgaagttccactttgaaat |
52478059 |
T |
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| Q |
129 |
agaagtgggagaatgcgtaagcccttgtcaagatatttgataacttgtccaatcatgcttcataatcataattcatacattattaattaacgatcaaatt |
228 |
Q |
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| T |
52478060 |
agaagtgggagaatgcgtaagcccttgtcaagatatttgataacttgtccaatcatgcttcataatcataattcatacatt----attaacgatcaaatt |
52478155 |
T |
|
| Q |
229 |
aacattagatagtcatggtcatgagtgacgccatgccattgttgacggcctattagcaactggtctagaactgttgttattctcagtggacatttacacc |
328 |
Q |
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| T |
52478156 |
aacattagatagtcatggtcatgagtgacgccatgccattgttgacggcctattagcaactggtctagaactgttgttattctcagtggacatttacacc |
52478255 |
T |
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| Q |
329 |
atcactttaccgttttttatttgtataagttaattataacggtgatcttttttaatatt |
387 |
Q |
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| T |
52478256 |
atcactttacc-tttattatttgtataagtaaattataacggtgatcttttttaatatt |
52478313 |
T |
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