View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_35 (Length: 383)
Name: NF0796_low_35
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 44754099 - 44753777
Alignment:
| Q |
1 |
cctattattactaaatggttgattttgagtagtagcataattgaggaagctattccaatgcatgggatttgattcaggagaactaaagctaagagtggaa |
100 |
Q |
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| T |
44754099 |
cctattattactatatggttgattttgagtagtagcatagttgaggaagctattccaatgcatgggatttgattcaggagaactaaagctaagagtggaa |
44754000 |
T |
|
| Q |
101 |
gaagggtatcttggtagttggttattgttgttgtagcttgaattgaatctaacaaagggtgatgatgttgaagaatttgatgggtttgaagtgaggtcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44753999 |
gaagggtatcttggtagttggttattgttgttgtagcttgaattgaatctaacaaagggtgatgatgttgaagaatttgatgggtttgaagtgaggtcaa |
44753900 |
T |
|
| Q |
201 |
gagtgatagttggatgtgaatgttgagatgatagtgcagggttggataggtataattgatttgattttgtaccatctggaagataaaagtttaggccatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44753899 |
gagtgatagttggatgtgaatgttgagatgatagtgcagggttggataggtataattgatttgattttgtaccatctggtagataaaagtttaggccatg |
44753800 |
T |
|
| Q |
301 |
aagattattgttggtctgtgctg |
323 |
Q |
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||||||||||||||| ||||||| |
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| T |
44753799 |
aagattattgttggtttgtgctg |
44753777 |
T |
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