View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0796_low_36 (Length: 367)
Name: NF0796_low_36
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_36 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 25 - 293
Target Start/End: Complemental strand, 7971840 - 7971572
Alignment:
| Q |
25 |
cttttggtgaatagttagggttgtggattgtgatgcctcaacaacttgtggcacaggtcggctcggacattgtctacatggtcaccggaggtgcatcatt |
124 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7971840 |
cttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccggaggtgcatcatt |
7971741 |
T |
|
| Q |
125 |
acaaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactttgtattgtctcatcta |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7971740 |
gcaaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcattttgtattgtctcatcta |
7971641 |
T |
|
| Q |
225 |
ccgaacttgaactccatttccggtgtatctttggtggcagccgtcatgtccatgaggtatatcgacatc |
293 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7971640 |
ccaaacttgaactccatttccggtgtatctttggtggcagccgtcatgtccatgaggtatatcgacatc |
7971572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 25 - 293
Target Start/End: Original strand, 8041848 - 8042116
Alignment:
| Q |
25 |
cttttggtgaatagttagggttgtggattgtgatgcctcaacaacttgtggcacaggtcggctcggacattgtctacatggtcaccggaggtgcatcatt |
124 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8041848 |
cttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccggaggtgcatcatt |
8041947 |
T |
|
| Q |
125 |
acaaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactttgtattgtctcatcta |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8041948 |
gcaaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcattttgtattgtctcatcta |
8042047 |
T |
|
| Q |
225 |
ccgaacttgaactccatttccggtgtatctttggtggcagccgtcatgtccatgaggtatatcgacatc |
293 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8042048 |
ccaaacttgaactccatttccggtgtatctttggtggcagccgtcatgtccatgaggtatatcgacatc |
8042116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 90 - 293
Target Start/End: Original strand, 8032034 - 8032237
Alignment:
| Q |
90 |
gacattgtctacatggtcaccggaggtgcatcattacaaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatga |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || || ||||||||||| ||| ||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
8032034 |
gacattgtctacatggtcaccggaggtgcatcattgcggaagttccacaatacagtgtgttcaagttgcaaaaatatcaaattgacctatttcattatga |
8032133 |
T |
|
| Q |
190 |
tctttgcctctgctcactttgtattgtctcatctaccgaacttgaactccatttccggtgtatctttggtggcagccgtcatgtccatgaggtatatcga |
289 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
8032134 |
tctttgcctctgctcaatttgtattgtgtcatctaccaaacttgaactccatttccggtgtatccttggttgcagcagtcatgtccatttggtatatcga |
8032233 |
T |
|
| Q |
290 |
catc |
293 |
Q |
| |
|
|||| |
|
|
| T |
8032234 |
catc |
8032237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 41382237 - 41381989
Alignment:
| Q |
27 |
tttggtgaatagttagggttgtggattgtgatgcctcaacaacttgtggcacaggtcggctcggacattgtctacatggtcaccggaggtgcatcattac |
126 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41382237 |
tttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatcattgc |
41382138 |
T |
|
| Q |
127 |
aaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactttgtattgtctcatctacc |
226 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
41382137 |
aaaaatttcacaatacagtttgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcaatttgtattgtgtcatctacc |
41382038 |
T |
|
| Q |
227 |
gaacttgaactccatttccggtgtatctttggtggcagccgtcatgtcc |
275 |
Q |
| |
|
||| | |||||| |||| |||||||||| || ||||| || |||||| |
|
|
| T |
41382037 |
caacctcaactccctttctagtgtatcttttgttgcagcagttatgtcc |
41381989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 91 - 287
Target Start/End: Complemental strand, 3297 - 3101
Alignment:
| Q |
91 |
acattgtctacatggtcaccggaggtgcatcattacaaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgat |
190 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | | ||| || ||||||||||| ||||||||||||||| |||||||||| | |||||||||||| |
|
|
| T |
3297 |
acattgtttacatggtcaccggaggtgcatcactgcgaaagttccacaatacagtgtgtccaagttgcaaaaatatcaaattgacatatttcattatgat |
3198 |
T |
|
| Q |
191 |
ctttgcctctgctcactttgtattgtctcatctaccgaacttgaactccatttccggtgtatctttggtggcagccgtcatgtccatgaggtatatc |
287 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
3197 |
ctttgcctctgctcaatttgtattgtgtcatctaccaaacttgaactccatttctggtgtatctttggtggcagcagtcatgtccatttggtatatc |
3101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 14198675 - 14198574
Alignment:
| Q |
155 |
ttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactttgtattgtctcatctaccgaacttgaactccatttccggtgtatct |
254 |
Q |
| |
|
||||||| ||||||||||| | ||| || ||||| |||||||||| ||||||||| |||||||| || || ||||||||||| ||||| ||||| ||| |
|
|
| T |
14198675 |
ttgcaaaaaaatcaaattgacttattttataatgatttttgcctctgttcactttgtcttgtctcacctccctaacttgaactctatttctggtgtctct |
14198576 |
T |
|
| Q |
255 |
tt |
256 |
Q |
| |
|
|| |
|
|
| T |
14198575 |
tt |
14198574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7008 times since January 2019
Visitors: 5773