View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_39 (Length: 344)
Name: NF0796_low_39
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_39 |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold1769 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 8348659 - 8348492
Alignment:
| Q |
81 |
tagcataggagaattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagc |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348659 |
tagcataggagaattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagc |
8348560 |
T |
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| Q |
181 |
attggtaatgaatatggctaccctaacaggaacaactaatggagtgaggataataacttggcatatat |
248 |
Q |
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| T |
8348559 |
attggtaatgaatatggctaccctaacaggaacaactaatggagtgaggataataacttggcatatat |
8348492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 8409904 - 8409804
Alignment:
| Q |
84 |
cataggagaattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcatt |
183 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||| || | ||||||||||||| |||||||||||||||||||||||| |
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| T |
8409904 |
cataggagaatttgaagaaattgccagtggtctgtgatacgctgtttagtac-aaaggaagccaaataccggctatagcgatgctaaatttagcagcatt |
8409806 |
T |
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| Q |
184 |
gg |
185 |
Q |
| |
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|| |
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| T |
8409805 |
gg |
8409804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 7915315 - 7915371
Alignment:
| Q |
129 |
ttagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattgg |
185 |
Q |
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| T |
7915315 |
ttagtacaaaatcatgccaaataccggctatagcgatgctaaatttagcagcattgg |
7915371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 8442818 - 8442755
Alignment:
| Q |
92 |
aattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccgg |
155 |
Q |
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|||| |||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
8442818 |
aatttgaagaaatatccagtgttctatgatacactgtttagtacaaaatgatgtcaaataccgg |
8442755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 7915429 - 7915476
Alignment:
| Q |
194 |
atggctaccctaacaggaacaactaatggagtgaggataataacttgg |
241 |
Q |
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|||| |||| ||||||||||||||||||||||||| |||| ||||||| |
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| T |
7915429 |
atggttaccttaacaggaacaactaatggagtgagaataaaaacttgg |
7915476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 8409762 - 8409728
Alignment:
| Q |
183 |
tggtaatgaatatggctaccctaacaggaacaact |
217 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
8409762 |
tggtaatgaatatggttaccctaacaggaacaact |
8409728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 69161 - 69238
Alignment:
| Q |
108 |
cagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattgg |
185 |
Q |
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|
||||| ||| |||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |
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| T |
69161 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcattgg |
69238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1769
Description:
Target: scaffold1769; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 230 - 277
Alignment:
| Q |
108 |
cagtggtctgtgatacactgattagtacaaaatgatgtcaaataccgg |
155 |
Q |
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||||| ||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
230 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccgg |
277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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