View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_40 (Length: 342)
Name: NF0796_low_40
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_40 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 38216165 - 38216494
Alignment:
| Q |
13 |
aatattcatggtaccaatagctatcatttctttattgccatcaatatggtaatttttgaacattgcaaagcttattcccaccgctattccttcctatata |
112 |
Q |
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| T |
38216165 |
aatattcatggtaccaatagctatcatttctttattgccatcaatatggtaatttttgaacattgcaaagcttcttcccactgctattccttcctatata |
38216264 |
T |
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| Q |
113 |
atcatcaattcagttttcaataccttgttggcataattaattgagagcnnnnnnnntatatatataaatgcacacaaaggaaatgaaatttgagttgtac |
212 |
Q |
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| T |
38216265 |
atcatcaattcagttttcaataccttgttggcataattaattgagagcaaaaaaaatatatatataaatgcacacaaaggaaatgaaatttgagttgtac |
38216364 |
T |
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| Q |
213 |
tcaccgcaagagctattataccagtaatgagtccagttttgatggctgtgcctatataaggtgacacaaacaccaaatctgttgctggaggtggatttag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38216365 |
tcaccgcaagagctattataccagtaatgagtccagttttgatggccgtgcctatataaggtgacacaaacaccaaatctgttgctgaaggtggatttag |
38216464 |
T |
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| Q |
313 |
tcccttcttcaattcccctatctgaaacaa |
342 |
Q |
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| T |
38216465 |
tcccttcttcaattcccctatctgaaacaa |
38216494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 31749751 - 31749661
Alignment:
| Q |
17 |
ttcatggtaccaatagctatcatttctttattgccatcaatatggtaatttttgaacattgcaaagcttattcccaccgctattccttcct |
107 |
Q |
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| T |
31749751 |
ttcatggttccaatagctatcatctctttgtttccatcaatatggtaatttttatacattgcaaagcttcttcccacagcgattccttcct |
31749661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 341
Target Start/End: Complemental strand, 31748699 - 31748573
Alignment:
| Q |
215 |
accgcaagagctattataccagtaatgagtccagttttgatggctgtgcctatataaggtgacacaaacaccaaatctgttgctggaggtggatttagtc |
314 |
Q |
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|||||||||||||| || ||| ||| || || |||||||| |||||| ||||| ||||||||||| ||||||||||| || ||||||||||||| |
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| T |
31748699 |
accgcaagagctataatgccaacaataaggcctgttttgatagctgtggtcatatatggtgacacaaataccaaatctgtgagtgatggtggatttagtc |
31748600 |
T |
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| Q |
315 |
ccttcttcaattcccctatctgaaaca |
341 |
Q |
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| T |
31748599 |
ctttcttcaattctcctatctgaaaca |
31748573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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