View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796_low_42 (Length: 319)

Name: NF0796_low_42
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796_low_42
NF0796_low_42
[»] chr5 (3 HSPs)
chr5 (119-255)||(35854545-35854681)
chr5 (49-236)||(10521323-10521510)
chr5 (182-255)||(35802504-35802577)
[»] chr4 (6 HSPs)
chr4 (90-231)||(55705908-55706049)
chr4 (123-225)||(54304257-54304359)
chr4 (119-231)||(45876742-45876854)
chr4 (119-225)||(47293489-47293595)
chr4 (125-230)||(45858817-45858922)
chr4 (125-231)||(56208543-56208649)
[»] chr8 (2 HSPs)
chr8 (94-243)||(7972057-7972206)
chr8 (96-225)||(7961689-7961818)
[»] chr2 (1 HSPs)
chr2 (125-225)||(24357488-24357588)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 119 - 255
Target Start/End: Complemental strand, 35854681 - 35854545
Alignment:
Q  119 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35854681 tctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtccttaccg 35854582  T
Q  219 gtccaaagcctcctatgttcaacctttttcgtcttgt 255  Q
    ||||||| ||||| |||| ||||||||||| ||||||    
T  35854581 gtccaaatcctcccatgtgcaacctttttcatcttgt 35854545  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 49 - 236
Target Start/End: Complemental strand, 10521510 - 10521323
Alignment:
Q  49 catagccaatacctcttgaaagcatgagtagagtaggaccggatcatgagagctccacaataccaacttttctgttttgaggtatattggccttcaattt 148  Q
    |||| ||||| || ||| |||| ||| |||||| ||||||||||| ||||||||| |||| |  ||| | | |||||||||||||||||||||| |||||    
T  10521510 cataaccaatgccccttaaaagtatgcgtagagaaggaccggatcttgagagctcgacaagattaacctgtttgttttgaggtatattggccttgaattt 10521411  T
Q  149 tgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaaagcctcctatgt 236  Q
    ||| |||||||| ||||  ||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||| ||||||||||    
T  10521410 tgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgatccaaatcctcctatgt 10521323  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 35802504 - 35802577
Alignment:
Q  182 agcatcaaccaaaccatgagatgttgcgtccttaccggtccaaagcctcctatgttcaacctttttcgtcttgt 255  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||||||| ||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgt 35802577  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 55706049 - 55705908
Alignment:
Q  90 gatcatgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaa 189  Q
    |||| |||||||||||||| |  ||| | |||||||||||||||||| || ||||||||||  |||||||| ||||  ||||||||||||||||||||||    
T  55706049 gatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaa 55705950  T
Q  190 ccaaaccatgagatgttgcgtccttaccggtccaaagcctcc 231  Q
    ||||||||||||||| |||||| ||||||||||||| |||||    
T  55705949 ccaaaccatgagatgctgcgtctttaccggtccaaaccctcc 55705908  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 54304359 - 54304257
Alignment:
Q  123 ttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtcc 222  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||  ||||||||||||||||||| ||||    
T  54304359 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc 54304260  T
Q  223 aaa 225  Q
    |||    
T  54304259 aaa 54304257  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 45876742 - 45876854
Alignment:
Q  119 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 218  Q
    ||||| |||||||||||| || |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||| ||| |||||||||    
T  45876742 tctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatccttaccg 45876841  T
Q  219 gtccaaagcctcc 231  Q
    ||||||| |||||    
T  45876842 gtccaaaccctcc 45876854  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 47293595 - 47293489
Alignment:
Q  119 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 218  Q
    |||||||||||||||||||||||||||||||||||||||||| || |  ||||  ||||||||||||||||||||||||||||||  ||||||||||| |    
T  47293595 tctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttactg 47293496  T
Q  219 gtccaaa 225  Q
    |||||||    
T  47293495 gtccaaa 47293489  T

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Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 45858817 - 45858922
Alignment:
Q  125 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 224  Q
    |||||||||||||||||||||||| ||||||||||| ||||  |||| |||||||||||||||||||| ||||||||||  ||| |||||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  225 agcctc 230  Q
    | ||||    
T  45858917 accctc 45858922  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 56208543 - 56208649
Alignment:
Q  125 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 224  Q
    ||||||||||   ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||  ||| || ||||||||| ||    
T  56208543 ttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggtctaa 56208642  T
Q  225 agcctcc 231  Q
    | |||||    
T  56208643 accctcc 56208649  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 94 - 243
Target Start/End: Original strand, 7972057 - 7972206
Alignment:
Q  94 atgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaa 193  Q
    |||||||||||||||||  ||| | |||||||||||| | ||||||||||||||||||||||||||| ||||  ||||  ||||  |||||||| |||||    
T  7972057 atgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaa 7972156  T
Q  194 accatgagatgttgcgtccttaccggtccaaagcctcctatgttcaacct 243  Q
    ||||| ||||  ||| || ||||||||||||| |||||| ||| ||||||    
T  7972157 accattagatactgcatctttaccggtccaaatcctcctctgtgcaacct 7972206  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 7961689 - 7961818
Alignment:
Q  96 gagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaac 195  Q
    |||| ||||||||||  ||| | | |||||||||| ||||||||||||||||||||||||||||| ||    ||||| |||||||||||||| ||||||     
T  7961689 gagaactccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaat 7961788  T
Q  196 catgagatgttgcgtccttaccggtccaaa 225  Q
    ||| |||| |||| || ||||| |||||||    
T  7961789 cattagatattgcatctttaccagtccaaa 7961818  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 24357588 - 24357488
Alignment:
Q  125 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 224  Q
    |||||||||||||||||||||||||||||| ||||| || |  || |  |||||||||||||||||||||||||| |||| ||| || ||||| ||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa 24357489  T
Q  225 a 225  Q
    |    
T  24357488 a 24357488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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