View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_54 (Length: 272)
Name: NF0796_low_54
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 35802663 - 35802826
Alignment:
| Q |
83 |
attgtcaaggttaaagtattgagagagtgttcctcgaattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtat |
182 |
Q |
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||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |
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| T |
35802663 |
attgtcaaggttaaagttttgagaaaccgttcctcgaattgaaccagttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagtat |
35802762 |
T |
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| Q |
183 |
cctgcatttgttgccacatcagacattgaagcaatgacgggtttttcggaagcaagagaactga |
246 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
35802763 |
cctgcacttgttgccgcatcagacattgaagcaatgacgggtttttttgaagcaagagatctga |
35802826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 10521109 - 10521033
Alignment:
| Q |
136 |
taagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaa |
212 |
Q |
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| T |
10521109 |
taagattttctgctacgatatctcctgctcccgttgccatgtagtatcctgcacttgctgctacatcagacattgaa |
10521033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 260
Target Start/End: Complemental strand, 55705700 - 55705559
Alignment:
| Q |
119 |
aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg |
218 |
Q |
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| T |
55705700 |
aattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgcactggctgccacgtcatacattgaagcaatg |
55705601 |
T |
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| Q |
219 |
acgggtttttcggaagcaagagaactgactgctgcccatatt |
260 |
Q |
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| T |
55705600 |
acaggtttttgggcagcaagagacctgatttcttcccatatt |
55705559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 228
Target Start/End: Original strand, 45878670 - 45878779
Alignment:
| Q |
119 |
aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg |
218 |
Q |
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||||||||||||||| || ||| ||||||| || |||| ||| ||||| |||||||||||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
45878670 |
aattgaaccagttaaggttagactttctgcaacaatagctcctgctcccattgccatgtagtatcctccacttgctgccacatcagacattgaagcaatg |
45878769 |
T |
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| Q |
219 |
acgggttttt |
228 |
Q |
| |
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|| ||||||| |
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| T |
45878770 |
actggttttt |
45878779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 54304116 - 54304053
Alignment:
| Q |
176 |
gtagtatcctgcatttgttgccacatcagacattgaagcaatgacgggtttttcggaagcaaga |
239 |
Q |
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| T |
54304116 |
gtagtatcctgcacttgttgccacatcagatattgaagcaatgatgggtttttcggcagcaaga |
54304053 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 56208877 - 56208972
Alignment:
| Q |
125 |
accagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatgac |
220 |
Q |
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| T |
56208877 |
accagttaaggtaagattttctgcaacaataactcctgctcccattgccatgtggtatcctccacttgctgtcatatgagacatcgaagcaatgac |
56208972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 47293289 - 47293221
Alignment:
| Q |
119 |
aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgc |
187 |
Q |
| |
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||||||||||||||| |||||||||||||| || ||| ||| || || ||||||| |||||||||||| |
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| T |
47293289 |
aattgaaccagttaaggtaagattttctgcaacaataactcctgcgcccattgccacgtagtatcctgc |
47293221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 45860206 - 45860263
Alignment:
| Q |
171 |
gccatgtagtatcctgcatttgttgccacatcagacattgaagcaatgacgggttttt |
228 |
Q |
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| T |
45860206 |
gccatatagtatcctccactagctgccacatcagacattgaagcaatgattggttttt |
45860263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 246
Target Start/End: Original strand, 7972415 - 7972542
Alignment:
| Q |
119 |
aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg |
218 |
Q |
| |
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||||||||||||||| ||||| |||||||| || ||| ||| || || |||||||||||||||||||| | |||||| ||||||||| ||||||| |
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| T |
7972415 |
aattgaaccagttaaggtaaggttttctgcaacaataactcctgcgcccattgccatgtagtatcctgcgctcattgccagatcagacatcaaagcaata |
7972514 |
T |
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| Q |
219 |
acgggtttttcggaagcaagagaactga |
246 |
Q |
| |
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|| ||||||| |||||||||||| |||| |
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| T |
7972515 |
actggttttttggaagcaagagacctga |
7972542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 24354112 - 24354011
Alignment:
| Q |
119 |
aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg |
218 |
Q |
| |
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||||||||||||||| |||||| ||||||| || |||| | | ||| |||||||||||||||||| || ||| ||||||||||| ||| ||||||||| |
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| T |
24354112 |
aattgaaccagttaaggtaagactttctgcaacaatagcatcagttcccattgccatgtagtatcctccacttgctgccacatcagccatcgaagcaatg |
24354013 |
T |
|
| Q |
219 |
ac |
220 |
Q |
| |
|
|| |
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|
| T |
24354012 |
ac |
24354011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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