View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796_low_56 (Length: 268)

Name: NF0796_low_56
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796_low_56
NF0796_low_56
[»] chr6 (1 HSPs)
chr6 (65-260)||(33151385-33151582)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 65 - 260
Target Start/End: Complemental strand, 33151582 - 33151385
Alignment:
Q  65 cacaattaactagagataaccgtttttgaacggatgttaataccttccct--atgtaatcgaattatgaattcgaaatctagtttaaaggactatttttg 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  33151582 cacaattaactagagataaccgtttttgaacggatgttaataccttccctctatgtaatcgaattatgaattcgaaatctagtttaaatgactatttttg 33151483  T
Q  163 ttttgaagggtttttataaggtacatcattccaagcacacattgtcagatcattaagagtgttaatatcagggtctctgtcatacttatattcatctc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  33151482 ttttgaagggtttttataaggtacatcattccaagcacacattgtcagatcattaagagtgttaatatcaaggtctatgtcatacttatatttatctc 33151385  T

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