View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_60 (Length: 252)
Name: NF0796_low_60
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44731962 - 44732184
Alignment:
| Q |
1 |
aatgccaatgtaatactatagtataactgatttttggaagccattgtaggtaatgaagtgtgacaaacaactgctttttaagttgattagtgaacagtta |
100 |
Q |
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| T |
44731962 |
aatgtcaatgcaatactatagtataactgatttttggaagccattgtaggtaatgaactgtgacaaacaactgctttttaagttgattagtgaacagtta |
44732061 |
T |
|
| Q |
101 |
aatgcgagaaagatgtgttgtgtttgtactcaagagtttatgtggtatttatagaagataatttaatgatgaattggatattaacattcttgttgttttc |
200 |
Q |
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| T |
44732062 |
aatgcgagaaagatgtgttgtgtttgtactcaagagtttatgtggtatttatagaagataatttaatgatgaattggatattaacattcgtgttgttttc |
44732161 |
T |
|
| Q |
201 |
aatttgaagcttaaaacaaattt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
44732162 |
aatttgaagcttaaaacaaattt |
44732184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30880832 - 30880610
Alignment:
| Q |
1 |
aatgccaatgtaatactatagtataactgatttttggaagccattgtaggtaatgaagtgtgacaaacaactgctttttaagttgattagtgaaca-gtt |
99 |
Q |
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| T |
30880832 |
aatgccaatgaaatgctatgatataattgattattggcagccatgttagctagtgaagtgtgacaaagaactg-ttttcaagttgattagttaacaagtt |
30880734 |
T |
|
| Q |
100 |
aaatgcgagaaagatgtgttgtgtttgtactcaagagtttatgtggtatttatagaagataatttaatgatgaattggatattaacattcttgttgtttt |
199 |
Q |
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| T |
30880733 |
aaatgtgagaaaggtttgttgtgcttgtactcgagagtttcagtggtatttataataggcaattcaatgatgatttgaatgttaacattcttctagtttt |
30880634 |
T |
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| Q |
200 |
caatttgaagcttaaaacaaattt |
223 |
Q |
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|||||||| ||||||||||||||| |
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| T |
30880633 |
caatttgatgcttaaaacaaattt |
30880610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 223
Target Start/End: Original strand, 16868419 - 16868545
Alignment:
| Q |
97 |
gttaaatgcgagaaagatgtgttgtgtttgtactcaagagtttatgtggtatttatagaagataatttaatgatgaattggatattaacattcttgttgt |
196 |
Q |
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|||||||| ||||||||||||||||| || | ||||||| || || |||||||||| || ||||||||||| ||||| ||| ||| |||||||| || |
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| T |
16868419 |
gttaaatgtgagaaagatgtgttgtgcttttgctcaagaacttttgcggtatttataatagggaatttaatgattaattgaatactaaaattcttgtagt |
16868518 |
T |
|
| Q |
197 |
tttcaatttgaagcttaaaacaaattt |
223 |
Q |
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||| || |||||||||||||||||||| |
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| T |
16868519 |
tttaaacttgaagcttaaaacaaattt |
16868545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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