View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796_low_62 (Length: 252)

Name: NF0796_low_62
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796_low_62
NF0796_low_62
[»] chr3 (1 HSPs)
chr3 (7-242)||(37111971-37112207)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 37112207 - 37111971
Alignment:
7 atatattatataattatgaagtaacacatgatcaactcaaaatctaaattttgnnnnnnnnnnnnatgattgaattttctttcat----gtagttctaaa 102  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||            ||||||||||||||||||||    |||||||||||    
37112207 atatattatataataattaagtaacacatgatcaactcaaaatctaaattttgtttattttt---atgattgaattttctttcattcatgtagttctaaa 37112111  T
103 acagcaaaagaatcgatattttactcatacacaaggcacataaatggttttgctgcaactttggaagaagaagtagcagctgagatagcaagttagagct 202  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37112110 acagcaaaagaatcgatattttactcgtacacaaggcacataaatggttttgctgcaactttggaagaagaagtagcagctgagatagcaagttagagct 37112011  T
203 cagaacacaacattctattctattttcttttctttctctg 242  Q
    ||||||||||||||||||||||||||||||||||||||||    
37112010 cagaacacaacattctattctattttcttttctttctctg 37111971  T

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