View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_62 (Length: 252)
Name: NF0796_low_62
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0796_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 37112207 - 37111971
Alignment:
Q |
7 |
atatattatataattatgaagtaacacatgatcaactcaaaatctaaattttgnnnnnnnnnnnnatgattgaattttctttcat----gtagttctaaa |
102 |
Q |
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T |
37112207 |
atatattatataataattaagtaacacatgatcaactcaaaatctaaattttgtttattttt---atgattgaattttctttcattcatgtagttctaaa |
37112111 |
T |
 |
Q |
103 |
acagcaaaagaatcgatattttactcatacacaaggcacataaatggttttgctgcaactttggaagaagaagtagcagctgagatagcaagttagagct |
202 |
Q |
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T |
37112110 |
acagcaaaagaatcgatattttactcgtacacaaggcacataaatggttttgctgcaactttggaagaagaagtagcagctgagatagcaagttagagct |
37112011 |
T |
 |
Q |
203 |
cagaacacaacattctattctattttcttttctttctctg |
242 |
Q |
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T |
37112010 |
cagaacacaacattctattctattttcttttctttctctg |
37111971 |
T |
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