View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_63 (Length: 252)
Name: NF0796_low_63
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26790624 - 26790402
Alignment:
| Q |
1 |
tatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagat |
100 |
Q |
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| T |
26790624 |
tatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagat |
26790525 |
T |
|
| Q |
101 |
tgtggtccatatacacacatttgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtc |
200 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
26790524 |
tgtggtgcacgtacacacatttgtgttctattgcatattgttacctgcaactgttatggttcctgaggttgtggtccctaaatggggaactgtttatgtc |
26790425 |
T |
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| Q |
201 |
ccttccatcatcacccttcttaa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
26790424 |
ccttccatcatcacccttcttaa |
26790402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 26817330 - 26817115
Alignment:
| Q |
5 |
aattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtg |
104 |
Q |
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| T |
26817330 |
aattcatgcatgtccttgtttaatatgtctattgcagaaagtgtctttgtggaagaagttatatattgtttgcaattttttctttgttcaaaagattgtg |
26817231 |
T |
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| Q |
105 |
gtccatatacacacatttgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtccctt |
204 |
Q |
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| T |
26817230 |
gtgcacatacacacatttgtgttctattgcgttctgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatgtccctt |
26817131 |
T |
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| Q |
205 |
ccatcatcacccttct |
220 |
Q |
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|||||||||||||||| |
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| T |
26817130 |
ccatcatcacccttct |
26817115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 34 - 218
Target Start/End: Complemental strand, 26830944 - 26830760
Alignment:
| Q |
34 |
cattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattg |
133 |
Q |
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||||||||||||||||||||| ||||||| || || |||||||||||||||||||| |||| |||||||||| ||| || |||||||||| |||||||| |
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| T |
26830944 |
cattgcagaaagtgtctttgtggaagaagatatatgttgtttacagttttttctttgttcggaagattgtggcccacatcaacacatttgttttctattg |
26830845 |
T |
|
| Q |
134 |
catattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcaccctt |
218 |
Q |
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| T |
26830844 |
cattgtgttacctgcaactgttatggtacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcaccctt |
26830760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 38 - 217
Target Start/End: Complemental strand, 26784219 - 26784040
Alignment:
| Q |
38 |
gcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattgcata |
137 |
Q |
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||||||||||||||||| |||||| | |||| |||||||||||||||||| | || ||||||||||| || ||| ||||||||||||| |||||||| |
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| T |
26784219 |
gcagaaagtgtctttgtggaagaaaacatatatggtttacagttttttctttgtccggaagattgtggttcacataaacacatttgtgttatattgcatt |
26784120 |
T |
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| Q |
138 |
ttgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcaccct |
217 |
Q |
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|||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
26784119 |
gtgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatatccctaccatcatcaccct |
26784040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 225
Target Start/End: Original strand, 41920374 - 41920565
Alignment:
| Q |
34 |
cattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattg |
133 |
Q |
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|||||||||||||||| |||| ||||||| ||||| | |||||||||| |||||| |||| || | | | || || | || |||||||| ||||| |
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| T |
41920374 |
cattgcagaaagtgtccttgtggaagaagatacatgtaatttacagtttcttctttgttcggaaagtgatagcacacatcaatacgtttgtgttttattg |
41920473 |
T |
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| Q |
134 |
catattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaatg |
225 |
Q |
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| T |
41920474 |
cattgttctacctgcaacagttttggtacctgaagttgcagtcccaaaatggggagctgtttatattccttcagttatcactcttcttaatg |
41920565 |
T |
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