View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796_low_65 (Length: 251)

Name: NF0796_low_65
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796_low_65
NF0796_low_65
[»] chr7 (2 HSPs)
chr7 (106-227)||(1564777-1564899)
chr7 (1-52)||(1564957-1565008)
[»] chr4 (1 HSPs)
chr4 (160-227)||(20383953-20384020)
[»] scaffold0050 (1 HSPs)
scaffold0050 (121-227)||(12864-12966)
[»] chr1 (2 HSPs)
chr1 (126-227)||(17122799-17122900)
chr1 (125-227)||(33064827-33064929)
[»] chr8 (1 HSPs)
chr8 (125-227)||(43848109-43848212)
[»] chr3 (1 HSPs)
chr3 (113-227)||(7164965-7165079)
[»] scaffold0111 (1 HSPs)
scaffold0111 (125-227)||(41242-41343)
[»] chr2 (1 HSPs)
chr2 (125-227)||(20374124-20374226)
[»] chr6 (1 HSPs)
chr6 (155-227)||(34673082-34673154)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 1564899 - 1564777
Alignment:
Q  106 tagtatgccctcttgtatatttttccct-tttgtttaataaaactttgtttgagattggcggcagaggatgagggttcttcaagatgtcaacatagttga 204  Q
    ||||| |||||||||||||||||||||  |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  1564899 tagtacgccctcttgtatatttttccccctttgtttaataaaactttatttgagattagcggcagaggatgagggttcttcaaggtgtcaacatagttga 1564800  T
Q  205 tatgtcattgcttccccttgatg 227  Q
    |||||||||||||||||||||||    
T  1564799 tatgtcattgcttccccttgatg 1564777  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1565008 - 1564957
Alignment:
Q  1 ttctttacgaatcgttgtggtatgctatgcctaattacaagtttccttaggc 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1565008 ttctttacggatcgttgtggtatgctatgcctaattacaagtttccttaggc 1564957  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 20383953 - 20384020
Alignment:
Q  160 ttggcggcagaggatgagggttcttcaagatgtcaacatagttgatatgtcattgcttccccttgatg 227  Q
    ||||||||| |||||| ||||||||| ||||| |||| ||||||| || || ||||||||||||||||    
T  20383953 ttggcggcataggatgggggttcttcgagatgccaacttagttgagatatcgttgcttccccttgatg 20384020  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 12966 - 12864
Alignment:
Q  121 tatatttttcccttttgtttaataaaactttgtttgagattggcggcagaggatgagggttcttcaagatgtcaacatagttgatatgtcattgcttccc 220  Q
    ||||||||||| |||| ||||||||||     |||||||||| ||||| | ||||  ||||||||  ||||||||| ||||||| ||||| ||||||||     
T  12966 tatatttttcctttttttttaataaaa----ttttgagattgacggcatatgatggaggttcttcgggatgtcaacctagttgaaatgtcgttgcttcct 12871  T
Q  221 cttgatg 227  Q
    |||||||    
T  12870 cttgatg 12864  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 17122799 - 17122900
Alignment:
Q  126 ttttcccttttgtttaataaaactttgtttgagattggcggcagaggatgagggttcttcaagatgtcaacatagttgatatgtcattgcttccccttga 225  Q
    ||||||| ||| |||||||||| ||| | |||| ||||||||| |||||||||||||| |  | || |||| ||||||  ||||| ||||||| ||||||    
T  17122799 ttttcccctttttttaataaaattttttctgagtttggcggcataggatgagggttctgcggggtgccaacctagttgggatgtcgttgcttctccttga 17122898  T
Q  226 tg 227  Q
    ||    
T  17122899 tg 17122900  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 33064929 - 33064827
Alignment:
Q  125 tttttcccttttgtttaataaaactttgtttgagattggcggcagaggatgagggttcttcaagatgtcaacatagttgatatgtcattgcttccccttg 224  Q
    |||| ||| ||| |||||||||| ||| | |||||||||||| | |||||| ||||||| |  | || |||| ||||||  ||||| |||||||||||||    
T  33064929 ttttccccctttttttaataaaattttctctgagattggcggtataggatgggggttctgcggggtgccaacctagttgggatgtcgttgcttccccttg 33064830  T
Q  225 atg 227  Q
    |||    
T  33064829 atg 33064827  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 43848212 - 43848109
Alignment:
Q  125 tttttcccttttgtttaataaaactttgtt-tgagattggcggcagaggatgagggttcttcaagatgtcaacatagttgatatgtcattgcttcccctt 223  Q
    |||||||||||| |||||||||  |||  | |||||||||||||| |||||||||||||| |  | || |||| ||||||  ||||  ||||||||||||    
T  43848212 tttttcccttttttttaataaattttttatctgagattggcggcataggatgagggttctgcggggtgccaacctagttgggatgttgttgcttcccctt 43848113  T
Q  224 gatg 227  Q
    ||||    
T  43848112 gatg 43848109  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 7164965 - 7165079
Alignment:
Q  113 ccctcttgtatat-ttttcccttttgtttaataaaactttgtttgagattggcggcagaggatgagggttcttcaagatgtcaacatagttgatatgtca 211  Q
    |||||||||| || ||||||||||| |||||||||| ||| |||||||||||| | | ||||||| ||||||||  | ||  ||| ||||||  ||||||    
T  7164965 ccctcttgtacatcttttccctttt-tttaataaaattttctttgagattggcagtataggatgaaggttcttcggggtgctaacctagttgggatgtca 7165063  T
Q  212 ttgcttccccttgatg 227  Q
    | ||||| ||||||||    
T  7165064 tcgcttcaccttgatg 7165079  T

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Target: scaffold0111 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 41343 - 41242
Alignment:
Q  125 tttttcccttttgtttaataaaactttgtttgagattggcggcagaggatgagggttcttcaagatgtcaacatagttgatatgtcattgcttccccttg 224  Q
    ||||||| ||||||| ||||||| ||| | |||| ||||||||| |||||||||||||| |  | || |||| ||||||  || || |||||||||||||    
T  41343 tttttccattttgtt-aataaaattttatctgagtttggcggcataggatgagggttctgcggggtgccaacctagttgggatttcgttgcttccccttg 41245  T
Q  225 atg 227  Q
    |||    
T  41244 atg 41242  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 20374226 - 20374124
Alignment:
Q  125 tttttcccttttgtttaataaaactttgtttgagattggcggcagaggatgagggttcttcaagatgtcaacatagttgatatgtcattgcttccccttg 224  Q
    ||||||| |||| |||||||||| ||| | |||| ||||| ||| |||||| ||||||| |  | || |||| ||||||  ||||| |||||||||||||    
T  20374226 tttttccattttttttaataaaattttatctgagtttggcagcataggatgggggttctgcggggtggcaacctagttgggatgtcgttgcttccccttg 20374127  T
Q  225 atg 227  Q
    |||    
T  20374126 atg 20374124  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 34673154 - 34673082
Alignment:
Q  155 tgagattggcggcagaggatgagggttcttcaagatgtcaacatagttgatatgtcattgcttccccttgatg 227  Q
    |||||||||||| | |||||| ||||||| | || ||||||| ||||||  ||||| |||||| |||||||||    
T  34673154 tgagattggcggtataggatgggggttctgcgaggtgtcaacctagttgggatgtcgttgctttcccttgatg 34673082  T

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