View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_66 (Length: 251)
Name: NF0796_low_66
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 45676302 - 45676460
Alignment:
| Q |
64 |
agcaaagctgcttgtaatagtataactgagtttagtatttttaaaacttttaatattgctattcatcctcctaaggcaccaaagatcattgaagtcttat |
163 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
45676302 |
agcaaagcttcttgtaatagtataactgagtttagtattcttaaaacttttaatattgctattcatccacctaaggcactaaagatcattgaagtcttat |
45676401 |
T |
|
| Q |
164 |
ggcatccacctatctttgactggattaaatgtaacacagatggtgcagccggtggtatt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45676402 |
ggcatccacctatctttgactggattaaatgtaacacagatggtgcagccggtggtatt |
45676460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 5750008 - 5750166
Alignment:
| Q |
64 |
agcaaagctgcttgtaatagtataactgagtttagtatttttaaaacttttaatattgctattcatcctcctaaggcaccaaagatcattgaagtcttat |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5750008 |
agcaaagctgcttgtaatagtataactgagtttagtattcgtaaaacttttaatattgctattcatccacctaaggcaccaaagatcattgaagtcttat |
5750107 |
T |
|
| Q |
164 |
ggcatccacctatctttgactggattaaatgtaacacagatggtgcagccggtggtatt |
222 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5750108 |
ggcatccacctatatttgactggattaaatgtaacacagatggtgcagccgatggtatt |
5750166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 19409148 - 19408990
Alignment:
| Q |
64 |
agcaaagctgcttgtaatagtataactgagtttagtatttttaaaacttttaatattgctattcatcctcctaaggcaccaaagatcattgaagtcttat |
163 |
Q |
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|||||| ||||||||||| ||||| |||| |||||||| |||||||||||||||| ||||||| || |||||||| ||||| |||||| ||||||| | |
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| T |
19409148 |
agcaaatctgcttgtaattctataattgagattagtattcataaaacttttaatatttctattcaaccccctaaggccccaaaaatcatttaagtcttct |
19409049 |
T |
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| Q |
164 |
ggcatccacctatctttgactggattaaatgtaacacagatggtgcagccggtggtatt |
222 |
Q |
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|||||||||||| |||||||| || ||||| |||| |||||||||||||||||||||| |
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| T |
19409048 |
cgcatccacctatatttgactgtataaaatgcaacatagatggtgcagccggtggtatt |
19408990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 35295590 - 35295747
Alignment:
| Q |
64 |
agcaaagctgcttgtaatagtataactgagtttagtatttttaaaacttttaatattgctattcatcctcctaaggcaccaaagatcattgaagtcttat |
163 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
35295590 |
agcaaagctgcttgtaattctataattgagtttagtattcttaaaacttttaatattgctattcatccacctaaggccccaaagatcattgaagtcttat |
35295689 |
T |
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| Q |
164 |
ggcatccacctatctttgactggattaaatgtaacacagatggtgcagccggtggtat |
221 |
Q |
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||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
35295690 |
ggcttccacctatttttgactggattaaatgtaacacagatggtgcaaccggttgtat |
35295747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 15606723 - 15606633
Alignment:
| Q |
122 |
ctattcatcctcctaaggcaccaaagatcattgaagtcttatggcatccacctatctttgactggattaaatgtaacacagatggtgcagc |
212 |
Q |
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||||||||||||| ||||| || | ||| || ||||| | |||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| |
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| T |
15606723 |
ctattcatcctccaaaggctcccatgataatagaagttgtctggcatcctcctatttttgattggattaaatgcaacacagatggagcagc |
15606633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 19131512 - 19131588
Alignment:
| Q |
136 |
aaggcaccaaagatcattgaagtcttatggcatccacctatctttgactggattaaatgtaacacagatggtgcagc |
212 |
Q |
| |
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||||| |||||||| |||||||| | ||||| || || |||||||| |||||||||||||| ||||| || ||||| |
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| T |
19131512 |
aaggctccaaagataattgaagttctttggcacccgcccatctttgattggattaaatgtaatacagacggagcagc |
19131588 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29451009 - 29450942
Alignment:
| Q |
1 |
caaaggatgaaccgtggccaagtagcaaggatcagcaagcgttagttaagcactaaataggatagcaa |
68 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29451009 |
caaaggatgaaccgtggccaagtagcaaggatcaacaagcgttagttaagcactaaataggatagcaa |
29450942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 31162660 - 31162582
Alignment:
| Q |
143 |
caaagatcattgaagtcttatggcatccacctatctttgactggattaaatgtaacacagatggtgcagccggtggtatt |
222 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
31162660 |
caaagctcattgaagtcttatggcatccacctatttttgactggattaaatg-cacacagatggtctagccggtggtatt |
31162582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 26631997 - 26631909
Alignment:
| Q |
124 |
attcatcctcctaaggcaccaaagatcattgaagtcttatggcatccacctatctttgactggattaaatgtaacacagatggtgcagc |
212 |
Q |
| |
|
||||||||||| || | |||| ||||||||||||||||||||||| | ||||||| | ||||||||||| |||||||||||| |||| |
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|
| T |
26631997 |
attcatcctcccaaaactccaagaatcattgaagtcttatggcatccccttatctttcaatggattaaatgcaacacagatggttcagc |
26631909 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 7803916 - 7803826
Alignment:
| Q |
122 |
ctattcatcctcctaaggcaccaaagatcattgaagtcttatggcatccacctatctttgactggattaaatgtaacacagatggtgcagc |
212 |
Q |
| |
|
||||||||||||| ||||| || | ||| | ||||| | |||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| |
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|
| T |
7803916 |
ctattcatcctccaaaggctcccatgataaaagaagttgtctggcatcctcctatatttgattggattaaatgcaacacagatggagcagc |
7803826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 14245132 - 14245042
Alignment:
| Q |
122 |
ctattcatcctcctaaggcaccaaagatcattgaagtcttatggcatccacctatctttgactggattaaatgtaacacagatggtgcagc |
212 |
Q |
| |
|
||||||||||||| || || || || || || ||||| | ||||| || ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14245132 |
ctattcatcctccaaaagctcccaaaataatagaagttgtctggcaccctcctatctttgactggattaaatgcaacacagatggtgcagc |
14245042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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