View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796_low_8 (Length: 726)
Name: NF0796_low_8
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 80 - 669
Target Start/End: Original strand, 35449459 - 35450048
Alignment:
| Q |
80 |
acaaaatagattgcaattgagctttcaatatcaagtttagaataatgaagattgcgattgtaacttccctcatttcatttgtgtatctcgttaactacta |
179 |
Q |
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| T |
35449459 |
acaaaatagattgcaattgagctttcaatatcaagtttagaataataaagattgcgattgtaacttcactcatttcatttgtgtatcttgttaactacta |
35449558 |
T |
|
| Q |
180 |
catctttttatcatgtctctagaatattgagtatgtattttaaattttcagaatgatagaaattaaaacaaatacaagaagaaaaaagtcatcatatctc |
279 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |
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| T |
35449559 |
catctttttatcatgtctatagaatattgagtatgtattttaaattttcagaatgatagaaattaaaacgaatacaagcagaaaaaagtcatcata-ctc |
35449657 |
T |
|
| Q |
280 |
ttttatggtaggcgcaccgtggcacataagaaacaaagataaataaagagaattttaatgaaattcagttcagaaattattatacttgtgnnnnnnnnn- |
378 |
Q |
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| T |
35449658 |
ttttatggtaggcgcaccgtggcacataagaaccagagataaataaagagaattttaatgaaattcagttcagaaattattatacttgtgaaaaaaaaaa |
35449757 |
T |
|
| Q |
379 |
ggacttgataccgatgaaaaacacaatctagtgaaaacggtgaaaacaatatttttggaggtagaaacttactagcgggggtaggtgttccattagaagt |
478 |
Q |
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| T |
35449758 |
ggacttgataccgatgaaaaacacaatctagtgaaaacggtgaaaacaatatttttggaggtagaaacttactagcgggggtaggtgttccattagaagt |
35449857 |
T |
|
| Q |
479 |
gggtagcgatgaaacatcatgataatgaaatccattagaggttggtagtgatgcaactttagcttgctctgagaccattaattccttttgtttatgcatt |
578 |
Q |
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| T |
35449858 |
gggtagcgatgaaacatcatgataatgaaatccattagaggtaggtagtgatgcaactttagcttgctctgagtctattaattccttttgtttatgcatt |
35449957 |
T |
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| Q |
579 |
aatttgttgaattcctctatttgcttcttcaacgccaatcttgtatagtaagcttggaagaactctggattttgttcttcaagcctttgcc |
669 |
Q |
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| T |
35449958 |
aatttgttgaattcctctatttgcttcttcaacgccaatcttgtatagtaagcttggaagaactctggattttgttcttcaagcctttgcc |
35450048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 548 - 669
Target Start/End: Original strand, 35441486 - 35441607
Alignment:
| Q |
548 |
tgagaccattaattccttttgtttatgcattaatttgttgaattcctctatttgcttcttcaacgccaatcttgtatagtaagcttggaagaactctgga |
647 |
Q |
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|||| |||||||||| |||||||| | || |||| ||||||| ||||||||| | ||||||||||||||||||||| ||||||| ||||||||| ||| |
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| T |
35441486 |
tgagtccattaattctttttgtttttccaacaattcattgaatttctctatttgttgcttcaacgccaatcttgtataataagctttgaagaactcagga |
35441585 |
T |
|
| Q |
648 |
ttttgttcttcaagcctttgcc |
669 |
Q |
| |
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|||||||| | |||| |||||| |
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| T |
35441586 |
ttttgttcattaagcttttgcc |
35441607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 35449416 - 35449465
Alignment:
| Q |
10 |
gcacagacacataatagcatgctggattctcagttgctgtaaaacaaaat |
59 |
Q |
| |
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| T |
35449416 |
gcacagacacataatagcatgctggattctcagttgctgtaaaacaaaat |
35449465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 35441307 - 35441377
Alignment:
| Q |
176 |
actacatctttttatcatgtctctagaatattgagtatgtattttaaattttcagaatgatagaaattaaa |
246 |
Q |
| |
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| T |
35441307 |
actacatctttttatcatgtctttggaatagtaactatgtattttgaatttttagaatgatacaagttaaa |
35441377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 553 - 669
Target Start/End: Complemental strand, 1864863 - 1864747
Alignment:
| Q |
553 |
ccattaattccttttgtttatgcattaatttgttgaattcctctatttgcttcttcaacgccaatcttgtatagtaagcttggaagaactctggattttg |
652 |
Q |
| |
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||||||||| ||||| ||||| || ||| ||||||| | || ||||| | |||||||||||||||||| || |||||||| |||||||| ||||||| |
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| T |
1864863 |
ccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggattttc |
1864764 |
T |
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| Q |
653 |
ttcttcaagcctttgcc |
669 |
Q |
| |
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||||| |||| |||||| |
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| T |
1864763 |
ttctttaagcttttgcc |
1864747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 441 - 561
Target Start/End: Original strand, 51575724 - 51575844
Alignment:
| Q |
441 |
agaaacttactagcgggggtaggtgttccattagaagtgggtagcgatgaaacatcatgataatgaaatccattagaggttggtagtgatgcaactttag |
540 |
Q |
| |
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|||| ||||||||| || || ||| |||||||||| | |||| |||| |||| |||||| |||||||||||||||| | ||||| ||||||||| | | |
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| T |
51575724 |
agaatcttactagcatggatatgtgatccattagaattttgtagtgatggaacaacatgatgatgaaatccattagagataggtagagatgcaactatgg |
51575823 |
T |
|
| Q |
541 |
cttgctctgagaccattaatt |
561 |
Q |
| |
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||| || |||||| |||||| |
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| T |
51575824 |
tttgttccgagaccgttaatt |
51575844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 662
Target Start/End: Original strand, 7239158 - 7239223
Alignment:
| Q |
597 |
atttgcttcttcaacgccaatcttgtatagtaagcttggaagaactctggattttgttcttcaagc |
662 |
Q |
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||||||| ||||||| ||| ||||||||| ||||||| |||||| || | ||| |||||||||||| |
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| T |
7239158 |
atttgctgcttcaacaccactcttgtataataagctttgaagaattcagcattatgttcttcaagc |
7239223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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