View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0796_low_9 (Length: 680)
Name: NF0796_low_9
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 36282145 - 36282458
Alignment:
| Q |
11 |
cacagagctcaaatagtcatctaaacctacatcataaacaccctccctccaatcaaggatcattctagaataaagtagtctcttcgtcatccaaattgca |
110 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36282145 |
cacaaagctcaaatagtcatgtaaacctacaccataaacaccctccctccaatcaaggatcattctagaataaagtagtttcttcgtcatccaaattgca |
36282244 |
T |
|
| Q |
111 |
actaatcccttctttaaaccaactttcctcaccacccgactcccctgcaccaatcacacaaatccttccaccacattgacgctttactccctcctatcct |
210 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36282245 |
actaatcccttctttaaaccaatttccctcaccacttgactccccttcaccaagcacacaaatccttccaccacattgacgctttactccctcctctcct |
36282344 |
T |
|
| Q |
211 |
aatacgattattatatttgaaaattgaactcaggttctagattcttcttaatttaaaaaagagttttagtttgcaatctaaatcatttgttgagaataaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
36282345 |
aatacgattattatatttgaaaattgaactcaagttccagattcttcttagtttaaagaagagttctagtttgcaatctaaatcaattgttgaggataaa |
36282444 |
T |
|
| Q |
311 |
ctttgtccgcgttc |
324 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
36282445 |
ctttgcccgcgttc |
36282458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 391 - 652
Target Start/End: Original strand, 36282518 - 36282779
Alignment:
| Q |
391 |
ccttcatcctctaaaaaatctatctctttgtaagaatttgggttctctcaatttttcttaaatgaaatctcaaccttcaaacatatgagagaaaactaaa |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36282518 |
ccttcatcctctaaaaaatctatctctttgtaagaatttggattctctcaatttttcttaaatgaaatctcaaccttcaaacatatgagagaaaactaaa |
36282617 |
T |
|
| Q |
491 |
gttgaattactaagaaaagtcgtaggagcattttaaccatgtagattgaaaatggagaaaagtcgacaaaattttcatgagagaattgtaatcctcttcc |
590 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36282618 |
gttaaattactaagaaaagtagtaggagcattttaaccatgtagattgaaaatggagaaaagtcgacaaaattttcatgagagaattgtaatcctcttcc |
36282717 |
T |
|
| Q |
591 |
tctttgtgtacatgcctcttcatttcctaactaactnnnnnnnctctcctactttacatttt |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
36282718 |
tctttgtgtacatgcctcttcatttcctaactaattaaaaaaactctcctactttacatttt |
36282779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 485
Target Start/End: Original strand, 45235027 - 45235079
Alignment:
| Q |
433 |
ttctctcaatttttcttaaatgaaatctcaaccttcaaacatatgagagaaaa |
485 |
Q |
| |
|
||||||||| |||||| || ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
45235027 |
ttctctcaagttttctcaagtgaaatctcaaccatcaaacataagagagaaaa |
45235079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 474
Target Start/End: Complemental strand, 12906665 - 12906624
Alignment:
| Q |
433 |
ttctctcaatttttcttaaatgaaatctcaaccttcaaacat |
474 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
12906665 |
ttctctcaagttttcttaaatgtaatctcaaccatcaaacat |
12906624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5944 times since January 2019
Visitors: 5761