View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0798_high_4 (Length: 398)

Name: NF0798_high_4
Description: NF0798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0798_high_4
NF0798_high_4
[»] chr2 (10 HSPs)
chr2 (1-385)||(39814564-39814949)
chr2 (168-385)||(39921978-39922190)
chr2 (1-152)||(12987338-12987496)
chr2 (295-385)||(39805574-39805664)
chr2 (168-263)||(39910807-39910902)
chr2 (293-385)||(39902501-39902589)
chr2 (179-266)||(39927403-39927489)
chr2 (293-385)||(39910959-39911047)
chr2 (293-385)||(39927798-39927886)
chr2 (240-385)||(39825884-39826028)
[»] chr1 (7 HSPs)
chr1 (1-162)||(5721884-5722045)
chr1 (1-159)||(11359328-11359487)
chr1 (1-37)||(52975688-52975724)
chr1 (1-33)||(1280532-1280564)
chr1 (1-33)||(17508545-17508577)
chr1 (1-37)||(43904365-43904401)
chr1 (1-33)||(49105524-49105556)
[»] chr5 (6 HSPs)
chr5 (1-159)||(18691068-18691227)
chr5 (1-159)||(41109009-41109168)
chr5 (1-159)||(33215073-33215230)
chr5 (60-159)||(41109725-41109824)
chr5 (1-32)||(22726503-22726534)
chr5 (1-37)||(33214547-33214583)
[»] chr7 (4 HSPs)
chr7 (1-162)||(17165849-17166014)
chr7 (9-153)||(41483079-41483230)
chr7 (79-151)||(7975991-7976063)
chr7 (1-33)||(29250498-29250530)
[»] chr8 (1 HSPs)
chr8 (1-164)||(36241071-36241234)
[»] chr3 (5 HSPs)
chr3 (1-153)||(25184763-25184916)
chr3 (1-153)||(35390497-35390656)
chr3 (1-36)||(42428432-42428467)
chr3 (1-35)||(55380341-55380375)
chr3 (1-33)||(9678749-9678781)
[»] chr4 (4 HSPs)
chr4 (1-151)||(25542295-25542452)
chr4 (1-35)||(11840907-11840941)
chr4 (1-35)||(48879617-48879651)
chr4 (1-29)||(45019069-45019097)
[»] chr6 (3 HSPs)
chr6 (79-159)||(832201-832281)
chr6 (1-36)||(10857321-10857356)
chr6 (1-58)||(832064-832122)
[»] scaffold0245 (1 HSPs)
scaffold0245 (1-33)||(6210-6242)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-33)||(6540-6572)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 39814564 - 39814949
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814564 ttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaat 39814663  T
Q  101 aatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctatcaatgtccttcacaatataaaggaccgcgatgtatctgtt 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39814664 aatctcccaaataccatagaattatcatctgcatttattcacatctgaaccagaatctatcaatgtccttcacaatataaaggactgcgatgtatctgtt 39814763  T
Q  201 accgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaactatataatatgtcaacta-nnnnnnnnnnattgcat 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  39814764 accgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaactatataatatgtcaactatttttttttttattgcat 39814863  T
Q  300 aacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814864 aacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 39814949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 168 - 385
Target Start/End: Original strand, 39921978 - 39922190
Alignment:
Q  168 cttcacaatataaaggaccgcgatgtatctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaactat 267  Q
    ||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39921978 cttcacaatataaaggaccacgatgcagctgttactgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaagtat 39922077  T
Q  268 ataatatgtcaactannnnnnnnnnattgcataacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatg 367  Q
    ||||| |||||||||          |||||||||||||||||||||||||||||||||||    ||||||| || |||||||||||||||||||||||||    
T  39922078 ataatttgtcaacta-cagttatttattgcataacacatataattaattcttttgcatta----aatctatatggcagggatccatgatgacaccccatg 39922172  T
Q  368 taaatccaagggcaacag 385  Q
    ||||||||||||||||||    
T  39922173 taaatccaagggcaacag 39922190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 12987496 - 12987338
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatca------ttcctttattatt 93  Q
    ||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||| | |||||||||||||| ||||      |||| ||||||||    
T  12987496 ttgggagagactaggctctctgattcctagaggttgattacttttctgcagttactttcctgtatcaataataatacatcacgtgcattcccttattatt 12987397  T
Q  94 atgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaacca 152  Q
    |||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  12987396 atgctataatctcccaaataccatagaattatcattggtatttattcatatctgaacca 12987338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 39805574 - 39805664
Alignment:
Q  295 tgcataacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 385  Q
    |||||||||||||||||||||||||  ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  39805574 tgcataacacatataattaattcttcagcattaattcaatttatatggcagggatccatgatgacaccccatgtaaatccaagggcaacag 39805664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 39910807 - 39910902
Alignment:
Q  168 cttcacaatataaaggaccgcgatgtatctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaa 263  Q
    ||||||||||||||||||| | ||| | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  39910807 cttcacaatataaaggaccacaatgcagctgttaccatgactaatatttaaaaccttgcttctcacagttaatcaataaaatatacttaacataaa 39910902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 39902501 - 39902589
Alignment:
Q  293 attgcataacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 385  Q
    ||||||||||||||||||||||||||||||||||    |||| ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  39902501 attgcataacacatataattaattcttttgcatt----caatttatatggcagggatccatgatgacaccccatgtaaatccaagggcaacag 39902589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 39927403 - 39927489
Alignment:
Q  179 aaaggaccgcgatgtatctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaacta 266  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  39927403 aaaggactgcgatgcagctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaat-tacttaatgtaaacta 39927489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 39910959 - 39911047
Alignment:
Q  293 attgcataacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 385  Q
    ||||||||||| ||||||||||||||||||||||    |||| ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  39910959 attgcataacagatataattaattcttttgcatt----caatttatatggcagggatccatgatgacaccccatgtaaatccaagggcaacag 39911047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 39927798 - 39927886
Alignment:
Q  293 attgcataacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 385  Q
    ||||||||||| ||||||||||||||||||||||    |||| ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  39927798 attgcataacagatataattaattcttttgcatt----caatttatatggcagggatccatgatgacaccccatgtaaatccaagggcaacag 39927886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 385
Target Start/End: Original strand, 39825884 - 39826028
Alignment:
Q  240 tcaataaaatatacttaatataaactatata----atatgtcaactannnnnnnnnnattgcataacacatataattaattcttttgcattaattcaatc 335  Q
    |||||||||||||| ||||||||||||||||    ||||||||||||          |||||||||  |||||||| ||||||||||||||    |||||    
T  39825884 tcaataaaatatacataatataaactatatatgtaatatgtcaactatatttattt-attgcataaggcatataataaattcttttgcatt----caatc 39825978  T
Q  336 tatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 385  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  39825979 tatatggcagggatccatgatgacaccccatgtaaatccaagggcaacag 39826028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 5721884 - 5722045
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5721884 ttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaat 5721983  T
Q  101 aatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctatca 162  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5721984 aatctcccaaataccatagaattatcatcggtatttattcacatctgaaccagaatctatca 5722045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 11359487 - 11359328
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11359487 ttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 11359388  T
Q  100 taatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 159  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11359387 taatctaccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 11359328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 52975724 - 52975688
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttgg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  52975724 ttgggagagactaggctctctaattcctagaggttgg 52975688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1280532 - 1280564
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||||||||||||| |||||||||||    
T  1280532 ttgggagagactaggctctctgattcctagagg 1280564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17508545 - 17508577
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||| |||||||||||||||||||||    
T  17508545 ttgggagagacaaggctctctaattcctagagg 17508577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43904365 - 43904401
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttgg 37  Q
    ||||||||||||||||||||||||| | |||||||||    
T  43904365 ttgggagagactaggctctctaatttcaagaggttgg 43904401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 49105524 - 49105556
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||||||||||||| |||||||||||    
T  49105524 ttgggagagactaggctctctgattcctagagg 49105556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 18691068 - 18691227
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18691068 ttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 18691167  T
Q  100 taatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 159  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18691168 taatctaccaaataccatagaattatcatcggtatttattcacatctgaaccagaatcta 18691227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 41109009 - 41109168
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41109009 ttgggagagactgggctctctaattcctagaggttggttacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 41109108  T
Q  100 taatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 159  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41109109 taatctaccaaataccatagaattatcatcggtatttattcacatctgaaccagaatcta 41109168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 33215230 - 33215073
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||| |  ||||||| ||||||||||||||    
T  33215230 ttgggagagactaggctctctaatttctagaggttggttacttttctgcagttactttcatgtatcaataataaca--tcattcccttattattatgcaa 33215133  T
Q  100 taatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 159  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  33215132 taatctcccaaataccattgaattatcatcggtatttattcacatctgaaccagtatcta 33215073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 41109725 - 41109824
Alignment:
Q  60 tatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41109725 tatatcaataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatcatcggtatttattcacatctgaaccagaatcta 41109824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 22726503 - 22726534
Alignment:
Q  1 ttgggagagactaggctctctaattcctagag 32  Q
    ||||||||||||||||||||||||||||||||    
T  22726503 ttgggagagactaggctctctaattcctagag 22726534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33214547 - 33214583
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttgg 37  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  33214547 ttgggagagactagggtctctaattcctaaaggttgg 33214583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 17166014 - 17165849
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatat---caataataatagatcattcctttattattatg 96  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||   ||||||||||| |||||||| |||||||||||    
T  17166014 ttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctgtatgatcaataataatatatcattcccttattattatg 17165915  T
Q  97 caataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctatca 162  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  17165914 caataatctcccaaataccatagaattatcatcgatatttattcacatctgaaccagtatctatca 17165849  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 41483079 - 41483230
Alignment:
Q  9 gactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatca------ttcctttattattatgcaata 101  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||| |||||||||| ||||      |||| ||||||||||||||||    
T  41483079 gactaggctctctaattcctagaggtaggttacttttctgcagttactttcctgtatgaataataatacatcacgtgcattcccttattattatgcaata 41483178  T
Q  102 atctcccaaataccatagaattatcatctgtatttattcacatctgaaccag 153  Q
    |||||||||||||||||||||||||||  |||||||| || |||||||||||    
T  41483179 atctcccaaataccatagaattatcattggtatttatacatatctgaaccag 41483230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 7975991 - 7976063
Alignment:
Q  79 cattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaacc 151  Q
    |||||||| |||||| |||||||||||||||| |||   |||||||||||  ||||||||||| |||||||||    
T  7975991 cattccttgattattttgcaataatctcccaagtactgaagaattatcattggtatttattcatatctgaacc 7976063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29250498 - 29250530
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||||||||||||| |||||||||||    
T  29250498 ttgggagagactaggctctctgattcctagagg 29250530  T

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Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 36241234 - 36241071
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||    
T  36241234 ttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctgtatcaataataatacatcattcccttattattatgcaa 36241135  T
Q  100 taatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctatcaat 164  Q
    | |||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||| ||||    
T  36241134 t-atctcccaaataccatagaattatcattggtatttattcacatttgaaccagtatctaacaat 36241071  T

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Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 25184763 - 25184916
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||||  ||||||||||||||    
T  25184763 ttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctatatcaataataaaacatcattcgcttattattatgcaa 25184862  T
Q  100 taatctcccaaataccatagaattatcatctgtatttattcacatctgaaccag 153  Q
    ||||||||||||||||||||| ||||||    ||||||||||||||||||||||    
T  25184863 taatctcccaaataccatagatttatcagtgatatttattcacatctgaaccag 25184916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 35390497 - 35390656
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttgg-tacttttctgcagttactttcttatatcaataataatagat------cattcctttattatt 93  Q
    ||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||| | | |||||||||||||| ||      |||| | ||||||||    
T  35390497 ttgggagagactaggctctctaactcctaaaggttggttacctttctgcagttacttacatgtatcaataataatacatcacatgcatttccttattatt 35390596  T
Q  94 atgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccag 153  Q
     | ||||||||| ||||||||||||||||||||||  ||||||||  | |||||||||||    
T  35390597 ttacaataatctaccaaataccatagaattatcattggtatttatagatatctgaaccag 35390656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42428432 - 42428467
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  42428432 ttgggagagactaggctctctaattcctagaggttg 42428467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 55380375 - 55380341
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggtt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  55380375 ttgggagagactaggctctctaattcctagaggtt 55380341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9678749 - 9678781
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||||||||||||| |||||||||||    
T  9678749 ttgggagagactaggctctctgattcctagagg 9678781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 25542452 - 25542295
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||| | |||||||||||||| |||||||| ||||||||||||||    
T  25542452 ttgggagggactaggctctctaattgctagaggttggttacttttatgcagttactttcctgtatcaataataatacatcattcccttattattatgcaa 25542353  T
Q  100 taatctcccaaataccataga------attatcatctgtatttattcacatctgaacc 151  Q
    |||||||||||||||||||||      ||||||||| |||||||||||||||||||||    
T  25542352 taatctcccaaataccatagaattagaattatcatcggtatttattcacatctgaacc 25542295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11840907 - 11840941
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggtt 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  11840907 ttgggagagactaggttctctaattcctagaggtt 11840941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48879651 - 48879617
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggtt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  48879651 ttgggagagactaggctctctaagtcctagaggtt 48879617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45019097 - 45019069
Alignment:
Q  1 ttgggagagactaggctctctaattccta 29  Q
    |||||||||||||||||||||||||||||    
T  45019097 ttgggagagactaggctctctaattccta 45019069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 832201 - 832281
Alignment:
Q  79 cattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 159  Q
    |||||| |||||||||| |||||||| |||||||| ||||||||||||||  ||||||| |   ||||||||||| |||||    
T  832201 cattcccttattattatccaataatcccccaaatatcatagaattatcattggtatttaatattatctgaaccagtatcta 832281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10857356 - 10857321
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  10857356 ttgggagagactaggctctctaattcctagaggttg 10857321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 832064 - 832122
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg-ttggtacttttctgcagttactttc 58  Q
    ||||||||||||||||||| ||||||||||||| ||| || |||| |||||||||||||    
T  832064 ttgggagagactaggctctataattcctagaggtttgttagttttatgcagttactttc 832122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6210 - 6242
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||||||||||||| |||||||||||    
T  6210 ttgggagagactaggctctctgattcctagagg 6242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6540 - 6572
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||||||||||||| |||||||||||    
T  6540 ttgggagagactaggctctctgattcctagagg 6572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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