View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0798_high_9 (Length: 251)
Name: NF0798_high_9
Description: NF0798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0798_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39814385 - 39814164
Alignment:
| Q |
1 |
tatatctaacggacatcaacctcaattgctttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaaggacatctatttgaaagaatat |
100 |
Q |
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| T |
39814385 |
tatatctaacagacatcaacctcaattgctttacgacaacatcaaaaagaattatgttcctatccaactcgttgtcaaggacatctatttgaaagaatat |
39814286 |
T |
|
| Q |
101 |
tgcgaattggatttgaattgtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctga |
200 |
Q |
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| T |
39814285 |
tgcgaattggatttgaattgtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctga |
39814186 |
T |
|
| Q |
201 |
ccgattaccataacgggattat |
222 |
Q |
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|||||||| ||||||||||||| |
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| T |
39814185 |
ccgattacaataacgggattat |
39814164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 39910782 - 39910578
Alignment:
| Q |
17 |
caacctcaattgctttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaaggacatctatttgaaagaatattgcgaattggatttga |
116 |
Q |
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| T |
39910782 |
caacctcaatttctttatgacaacatcaaaaacaattatgttgatatccaactcgttgtcaaggacatctatt-gaaagaatattgtgaattggatttga |
39910684 |
T |
|
| Q |
117 |
attgtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgaccgattaccataacgg |
216 |
Q |
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| T |
39910683 |
attgactgcaatgtgactaacacagccagctgtctgccacatctagaccgtctgatattgattgaacgtttaagatctggctgaccggttacaataacgg |
39910584 |
T |
|
| Q |
217 |
gattat |
222 |
Q |
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|||||| |
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| T |
39910583 |
gattat |
39910578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 39927372 - 39927183
Alignment:
| Q |
17 |
caacctcaattgctttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaaggacatctatttgaaagaatattgcgaattggatttga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
39927372 |
caacctcaattgctttacgacaacatcaaaaacaattatgtttctatccaactggttgtcaaggacatctatttgaaacaatattgcgaactggatttga |
39927273 |
T |
|
| Q |
117 |
attgtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgaccgattaccataacgg |
216 |
Q |
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| T |
39927272 |
attgtg-----tgtgactaacgcagccagttgtctgccaca-----------tgatcttgattgaacgtttaagatctggcagaccggttacaataacgg |
39927189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 39825827 - 39825657
Alignment:
| Q |
31 |
ttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaaggac-atctatttgaaagaatattgcgaattggatttgaattgtgtgcaatg |
129 |
Q |
| |
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| T |
39825827 |
ttacgacaacataaaaaacaattatgttgttatccaacttgttgtcatggaccatttatca-aaagactattgcgaataggatttgaactgtgtgcaatc |
39825729 |
T |
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| Q |
130 |
tgacta-acgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgac |
201 |
Q |
| |
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| ||| ||| || || ||||| |||||||||||||||||||||| |||| |||||||||||| |||||||| |
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| T |
39825728 |
taacttcacg-agtcaactgtcagccacatctagaccgtctgatcaagattgaacgtttaagatgtggctgac |
39825657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 39902397 - 39902350
Alignment:
| Q |
31 |
ttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaa |
78 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
39902397 |
ttacgacaacatcaaaaacaattattttgctatccaactcgttgtcaa |
39902350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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