View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0798_low_1 (Length: 538)
Name: NF0798_low_1
Description: NF0798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0798_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 34161266 - 34161770
Alignment:
| Q |
1 |
ttttgtggagattctacagccaactccacgaaatcgggcacggtgaaatgagttgtttatgaagcttcccagaaggtgaatattcttcaaataaaagagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34161266 |
ttttgtggagattctacagccaactccacgaaattgggcacggtgaagtgagttgtttatgaagcttcccagaaggtgaatattcttcaaataaaagagt |
34161365 |
T |
|
| Q |
101 |
ctattattagaacataattgaattgaaggtatggcaggaaaggtagtggagttattcttacctcaaacttgcactaggatagggtctatgaatgagagag |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34161366 |
ctattattagaacataattgaattgaaattatggcaggaaaggtagtggagttattcttacctcaaacttgcactaggatagggtctatgaatgagagag |
34161465 |
T |
|
| Q |
201 |
tttgatactgatgcagaagtgacgtgaagttagtgtgttggattaagagtataaaaggaaggaaattgagaagattaaggaagagatcgtgtgagtgagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| |
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| T |
34161466 |
tttgatactgatgcagaagtgacgtgaagttagtgtgttggattaagagtataaaaggaaggaagttgagaagattaaggaggagatcgt----gtgagt |
34161561 |
T |
|
| Q |
301 |
gagtgcaagctctaaccgacttaaccagtgaactgggttggacagattaggtcttggaggtgtgtatgctagtaacttgatgcaaaagctaaggatgact |
400 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34161562 |
gagtgcaagctctaaccgacttaaccattgaactgggttggacagattaggtcttggaggtgtgtatgctaataacttgatgcaaaagctaaggatgact |
34161661 |
T |
|
| Q |
401 |
aagtctacccataaccgatttttcccacatgttttatattttcctcaaaacttctctactaataataacaaatctcaatttacttactcattaatctcat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34161662 |
aagtctacccataaccgatttttcccacatgttttatattttcctcaaaacttctctactaataataacaaatctcaatttacttactcattaatctcat |
34161761 |
T |
|
| Q |
501 |
ggctcaatg |
509 |
Q |
| |
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||||||||| |
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| T |
34161762 |
ggctcaatg |
34161770 |
T |
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