View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0798_low_13 (Length: 295)
Name: NF0798_low_13
Description: NF0798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0798_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 25624976 - 25625241
Alignment:
| Q |
1 |
ccccatttttaacgactacagttctgttgggtattcacttcttctcaagaaagagaaagcgattattgttgagcccgatcgggttgtgattcctaatgga |
100 |
Q |
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| T |
25624976 |
ccccatttttaacgactacagttctgttgggtattcacttcttctcaagaaagagaaagcgattattgttgagcccgatcgggttgtgattcctaatgga |
25625075 |
T |
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| Q |
101 |
cctgcatttggatgtgtgttgatgaatgatttccttaaggcacttgcgaagcgtctcaaacacaacaatgttgcatatgaaaattaccataggatatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25625076 |
cctgcatttggatgtgtgttgatgaatgatttccttaaggcacttgcgaagcatctcaaacacaacaatgttgcatatgaaaattaccataggatatttg |
25625175 |
T |
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| Q |
201 |
tcccaaacggaaaacctttgaaatctgagccaaaagaacctttgagagtcaatgttatgttccaac |
266 |
Q |
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| T |
25625176 |
tcccaaacggaaaacctttgaaatctgagccaaaagaaccattgagagtcaatgttatgttccaac |
25625241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 2 - 266
Target Start/End: Original strand, 25605345 - 25605609
Alignment:
| Q |
2 |
cccatttttaacgactacagttctgttgggtattcacttcttctcaagaaagagaaagcgattattgttgagcccgatcgggttgtgattcctaatggac |
101 |
Q |
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| T |
25605345 |
cccatttttaatgactacagctctgttgggtattcacttcttctcaagaaagagaaggcaatcattgtgcagcccgatcgggttgtggttgctaatggac |
25605444 |
T |
|
| Q |
102 |
ctgcatttggatgtgtgttgatgaatgatttccttaaggcacttgcgaagcgtctcaaacacaacaatgttgcatatgaaaattaccataggatatttgt |
201 |
Q |
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| T |
25605445 |
ctgcatttggatgcattttgatgaaggatttcctaaaggcacttgcaaagcgtctcaaacacaacaatgctgcatatgaaaattaccataggatatttgt |
25605544 |
T |
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| Q |
202 |
cccaaacggaaaacctttgaaatctgagccaaaagaacctttgagagtcaatgttatgttccaac |
266 |
Q |
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| T |
25605545 |
cccagatgggaaacctttgaagtcagcaccaaaagaacctttgagagttaatgttatgttccaac |
25605609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 20435439 - 20435578
Alignment:
| Q |
17 |
tacagttctgttgggtattcacttcttctcaagaaagagaaagcgattattgttgagcccgatcgggttgtgattcctaatggacctgcatttggatgtg |
116 |
Q |
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| T |
20435439 |
tacagttctgttggatactcacttcttttgaagaaagaaaaagctattattgttcagcctgatagggttgtgattggaaatggtcctacatttgggtgtg |
20435538 |
T |
|
| Q |
117 |
tgttgatgaatgatttccttaaggcacttgcgaagcgtct |
156 |
Q |
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| T |
20435539 |
tcttgatgaaggattttcttagcgcgctcgcgaagcgtct |
20435578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 5331524 - 5331675
Alignment:
| Q |
5 |
atttttaacgactacagttctgttgggtattcacttcttctcaagaaagagaaagcgattattgttgagcccgatcgggttgtgattcctaatggacctg |
104 |
Q |
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||||| || ||||||||||||||||| || || |||||| | |||||||| ||||| || |||||| |||| ||| ||||||||||| ||||| || |
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| T |
5331524 |
attttcaatgactacagttctgttggttactcgcttcttttgaagaaagaaaaagctataattgttcagcctgatagggttgtgattggaaatggtccaa |
5331623 |
T |
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| Q |
105 |
catttggatgtgtgttgatgaatgatttccttaaggcacttgcgaagcgtct |
156 |
Q |
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||||||| ||||| |||||||| ||||| |||| || || ||||||||||| |
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| T |
5331624 |
catttgggtgtgtcttgatgaaggattttcttagcgcgctcgcgaagcgtct |
5331675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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