View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0798_low_15 (Length: 265)

Name: NF0798_low_15
Description: NF0798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0798_low_15
NF0798_low_15
[»] chr1 (4 HSPs)
chr1 (37-265)||(965816-966044)
chr1 (104-262)||(18172114-18172274)
chr1 (29-261)||(18548096-18548334)
chr1 (29-105)||(18169100-18169173)
[»] chr5 (1 HSPs)
chr5 (29-261)||(14460350-14460588)
[»] chr2 (4 HSPs)
chr2 (29-261)||(10733501-10733739)
chr2 (29-261)||(1979630-1979868)
chr2 (29-169)||(4789530-4789673)
chr2 (159-259)||(24314477-24314580)
[»] chr3 (1 HSPs)
chr3 (29-261)||(8354348-8354586)
[»] chr8 (1 HSPs)
chr8 (71-169)||(26588422-26588523)
[»] chr6 (1 HSPs)
chr6 (159-259)||(19101876-19101979)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 37 - 265
Target Start/End: Complemental strand, 966044 - 965816
Alignment:
Q  37 aaggaagttggtggaaactagaaaacttattacttatccaataatgtatttactttcgaagttagcattagtattacatgtagcaactgcaacttttgag 136  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  966044 aaggaagttggtggaaactagaaaacttattacttattcaatgatgtatttacttacgaagttagcatttgtattacatgtggcaactgcaacttttgag 965945  T
Q  137 agtttctctaatgtgaactttatgaagaatcaattgcagaaccatattgaggtgaatttttgaatgattgtcaagcaacatatatagagtgatacattgg 236  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  965944 agtttctctattgtgaactttatgaagaatcaattgcaggaccatattgaggtgaatttttgaatgatcgtcaagcaacatatatagagtgatacattgg 965845  T
Q  237 ataatgttgaaaatgaaaaaatcttacaa 265  Q
    |||||||||||||||||||||||||||||    
T  965844 ataatgttgaaaatgaaaaaatcttacaa 965816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 262
Target Start/End: Original strand, 18172114 - 18172274
Alignment:
Q  104 ttagtattacatgtagcaactgcaacttttga---gagtttctctaatgtgaactttatgaagaatcaattgcagaaccatattg-aggtgaatttttga 199  Q
    |||||||||||||||||| ||||| ||||| |   |||||| || | | | |||||||||| ||||||||||||  ||||||| | ||||||||||| ||    
T  18172114 ttagtattacatgtagcagctgcatcttttcaaaggagtttatccactataaactttatgatgaatcaattgcacgaccatatgggaggtgaattttgga 18172213  T
Q  200 atgattgtcaagcaacatatatagagtgatacattggataatgttgaaaatgaaaaaatctta 262  Q
    |||||||||   ||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  18172214 atgattgtcggacaacatatatag--tgatacattgcataatgttgaaaatgaaaaaatctta 18172274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 18548334 - 18548096
Alignment:
Q  29 gatctttcaaggaagttggtggaaactagaaaacttattacttatccaataatgtatttactttcgaagttagcattagtattacatgtagcaactgcaa 128  Q
    ||||||||||| ||| ||||||||||||||| || |||| ||||||||||  ||||||||| || ||||||||||||| | |||| ||| || |||||||    
T  18548334 gatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacgttagaagttagcattacttttacctgtggctactgcaa 18548235  T
Q  129 cttttga---gagtttctctaatgtgaactttatgaagaatcaattgcagaaccatat-tgaggtgaatttttgaatgattgtcaagcaacatatat--a 222  Q
    || ||||   ||||||||||  | |||| ||| ||||||||||| |||  |||| |||  ||| ||| |||||||||| ||||   | |||||| ||  |    
T  18548234 ctgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccgtatgggagatgagtttttgaatggttgtttggtaacatacattga 18548135  T
Q  223 gagtgatacattggataatgttgaaaatgaaaaaatctt 261  Q
    |||||||| ||| |||| |||||||||||||||||||||    
T  18548134 gagtgatatatttgatagtgttgaaaatgaaaaaatctt 18548096  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 18169100 - 18169173
Alignment:
Q  29 gatctttcaaggaagttggtggaaactagaaaacttattacttatccaataatgtatttactttcgaagttagcatt 105  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||   ||||||||||||||  |||||||||||    
T  18169100 gatctttcaaagaagttggtggaaactagaaaacttattactaatcc---aatgtatttacttttaaagttagcatt 18169173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 14460588 - 14460350
Alignment:
Q  29 gatctttcaaggaagttggtggaaactagaaaacttattacttatccaataatgtatttactttcgaagttagcattagtattacatgtagcaactgcaa 128  Q
    ||||||||||| ||| ||||||||||||||| || |||| ||||||||||  |||||||||||| ||||||||||||| | |||| ||| || |||||||    
T  14460588 gatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaa 14460489  T
Q  129 cttttga---gagtttctctaatgtgaactttatgaagaatcaattgcagaaccatat-tgaggtgaatttttgaatgattgtcaagcaacatatat--a 222  Q
    || ||||   ||||||||||  | |||| ||| ||||||||||| |||  |||| |||  ||| ||| |||||||||| ||||   | |||||| ||  |    
T  14460488 ctgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccgtatgggagatgagtttttgaatggttgtttggtaacatacattga 14460389  T
Q  223 gagtgatacattggataatgttgaaaatgaaaaaatctt 261  Q
    |||||||| ||| |||| |||||||||||||||||||||    
T  14460388 gagtgatatatttgatagtgttgaaaatgaaaaaatctt 14460350  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 10733501 - 10733739
Alignment:
Q  29 gatctttcaaggaagttggtggaaactagaaaacttattacttatccaataatgtatttactttcgaagttagcattagtattacatgtagcaactgcaa 128  Q
    ||||||||||| ||| ||||||||||||||| || |||| |||||| |||  |||||||||||| ||||||||||||| | |||| ||| || |||||||    
T  10733501 gatctttcaagaaagatggtggaaactagaagacatattgcttatctaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaa 10733600  T
Q  129 cttttga---gagtttctctaatgtgaactttatgaagaatcaattgcagaaccatat-tgaggtgaatttttgaatgattgtcaagcaacatatat--a 222  Q
    || ||||   ||||||||||  | |||| ||| |||||||||||||||  |||| |||  ||| ||| |||||||||| ||||   | |||||| ||  |    
T  10733601 ctgttgaaaggagtttctctgctatgaaatttgtgaagaatcaattgcgcaaccgtatgggagatgagtttttgaatggttgtttggtaacatacattga 10733700  T
Q  223 gagtgatacattggataatgttgaaaatgaaaaaatctt 261  Q
    |||||||| |||  ||| |||||||||||||||||||||    
T  10733701 gagtgatatattttatagtgttgaaaatgaaaaaatctt 10733739  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 1979630 - 1979868
Alignment:
Q  29 gatctttcaaggaagttggtggaaactagaaaacttattacttatccaataatgtatttactttcgaagttagcattagtattacatgtagcaactgcaa 128  Q
    ||||||||||| ||| ||||||||||||||| || ||||  |||||||||  |||||||||||| ||||||||||||| | |||| | | || |||||||    
T  1979630 gatctttcaagaaagatggtggaaactagaagacatattgtttatccaatggtgtatttacttttgaagttagcattacttttacctatggctactgcaa 1979729  T
Q  129 cttttga---gagtttctctaatgtgaactttatgaagaatcaattgcagaaccatat-tgaggtgaatttttgaatgattgtcaagcaacata--tata 222  Q
    |  ||||   ||||||||||  | |||| ||| ||||||||||| |||  |||| |||  ||| ||| |||||||||| ||||   | ||||||  |  |    
T  1979730 ccgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccgtatgggagatgagtttttgaatggttgtttggtaacatactttga 1979829  T
Q  223 gagtgatacattggataatgttgaaaatgaaaaaatctt 261  Q
    |||||||| ||| |||| |||||||||||||||||||||    
T  1979830 gagtgatatatttgatagtgttgaaaatgaaaaaatctt 1979868  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 4789673 - 4789530
Alignment:
Q  29 gatctttcaaggaagttggtggaaactagaaaacttattacttatccaataatgtatttactttcgaagttagcattagtattacatgtagcaactgcaa 128  Q
    ||||||||||| ||| ||||||||||||||| || |||| ||||||||||  |||||||||||| |||||||| |||| | |||| ||| || |||||||    
T  4789673 gatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttactttagaagttagtattacttttacctgtggctactgcaa 4789574  T
Q  129 cttttga---gagtttctctaatgtgaactttatgaagaatcaa 169  Q
    || ||||   ||||||||||  | |||| ||| |||||||||||    
T  4789573 ctgttgaaaggagtttctctgctatgaaatttgtgaagaatcaa 4789530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 24314580 - 24314477
Alignment:
Q  159 tgaagaatcaattgcagaaccatatt-gaggtgaatttttgaatgattgtcaagcaacatatat--agagtgatacattggataatgttgaaaatgaaaa 255  Q
    ||||||||| | |||| |||| |||| ||||||||||||| |||| ||||| || ||||| |||  ||| ||||| ||| |||| |||||| ||||||||    
T  24314580 tgaagaatctactgcacaaccgtattagaggtgaattttttaatggttgtctagtaacatttatcaagaatgatatatttgatagtgttgagaatgaaaa 24314481  T
Q  256 aatc 259  Q
    ||||    
T  24314480 aatc 24314477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 8354586 - 8354348
Alignment:
Q  29 gatctttcaaggaagttggtggaaactagaaaacttattacttatccaataatgtatttactttcgaagttagcattagtattacatgtagcaactgcaa 128  Q
    ||||||||||| ||| ||||||||||||||| || |||| ||||||||||  |||||||||||| ||||||||||||| | |||| ||| || |||||||    
T  8354586 gatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaa 8354487  T
Q  129 cttttga---gagtttctctaatgtgaactttatgaagaatcaattgcagaaccatat-tgaggtgaatttttgaatgattgtcaagcaacatatat--a 222  Q
    || ||||   ||||||||||  | |||| ||| ||||||||||| |||  |||| |||  ||| | | |||||||||| |||    | |||||| ||  |    
T  8354486 ctgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccgtatgggagatcagtttttgaatggttgcttggtaacatacattga 8354387  T
Q  223 gagtgatacattggataatgttgaaaatgaaaaaatctt 261  Q
    |||||||| ||| |||| |||||||||||||||||||||    
T  8354386 gagtgatatatttgatagtgttgaaaatgaaaaaatctt 8354348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 26588523 - 26588422
Alignment:
Q  71 tatccaataatgtatttactttcgaagttagcattagtattacatgtagcaactgcaacttttga---gagtttctctaatgtgaactttatgaagaatc 167  Q
    ||||||||  |||||||||||| ||||||||||||| | |||| ||| || ||||||||| ||||   ||||||||||  | |||| ||| |||||||||    
T  26588523 tatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatc 26588424  T
Q  168 aa 169  Q
    ||    
T  26588423 aa 26588422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 19101876 - 19101979
Alignment:
Q  159 tgaagaatcaattgcagaaccatatt-gaggtgaatttttgaatgattgtcaagcaacatatat--agagtgatacattggataatgttgaaaatgaaaa 255  Q
    ||||||||| | |||| |||| |||| ||||||||||||| |||||||||  || ||||| |||  ||| ||||| ||| |||| |||||| ||||||||    
T  19101876 tgaagaatctactgcacaaccgtattagaggtgaattttttaatgattgtttagtaacatttatcaagaatgatatatttgatagtgttgagaatgaaaa 19101975  T
Q  256 aatc 259  Q
    ||||    
T  19101976 aatc 19101979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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